---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/meta-schema.json
name: "bedtools"
## TODO nf-core: Add a description of the module and list keywords
description: write your description here
keywords:
  - sort
  - example
  - genomics
tools:
  - "bedtools":
      ## TODO nf-core: Add a description and other details for the software below
      description: "A powerful toolset for genome arithmetic"
      homepage: "None"
      documentation: "None"
      tool_dev_url: "None"
      doi: ""
      licence: ["MIT"]
      identifier: biotools:bedtools

## TODO nf-core: Add a description of all of the variables used as input
input:
  #
  ## TODO nf-core: Delete / customise this example input
  - bam:
      type: file
      description: Sorted BAM/CRAM/SAM file
      pattern: "*.{bam,cram,sam}"
      ontologies:
        - edam: "http://edamontology.org/format_25722"
        - edam: "http://edamontology.org/format_2573"
        - edam: "http://edamontology.org/format_3462"

## TODO nf-core: Add a description of all of the variables used as output
output:
  - bam:
      #
      ## TODO nf-core: Delete / customise this example output
      - "*.bam":
          type: file
          description: Sorted BAM/CRAM/SAM file
          pattern: "*.{bam,cram,sam}"
          ontologies:
            - edam: "http://edamontology.org/format_25722"
            - edam: "http://edamontology.org/format_2573"
            - edam: "http://edamontology.org/format_3462"

  - versions:
      - "versions.yml":
          type: file
          description: File containing software versions
          pattern: "versions.yml"

authors:
  - "@mathysgrapotte"
maintainers:
  - "@mathysgrapotte"
