---

# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/meta-schema.json

name: "bedtools"

## TODO nf-core: Add a description of the module and list keywords

description: write your description here

keywords:

  - sort

  - example

  - genomics

tools:

  - "bedtools":

      ## TODO nf-core: Add a description and other details for the software below

      description: "A powerful toolset for genome arithmetic"

      homepage: "None"

      documentation: "None"

      tool_dev_url: "None"

      doi: ""

      licence: ["MIT"]

      identifier: biotools:bedtools

## TODO nf-core: Add a description of all of the variables used as input

input:

  #

  ## TODO nf-core: Delete / customise this example input

  - bam:

      type: file

      description: Sorted BAM/CRAM/SAM file

      pattern: "*.{bam,cram,sam}"

      ontologies:

        - edam: "http://edamontology.org/format_25722"

        - edam: "http://edamontology.org/format_2573"

        - edam: "http://edamontology.org/format_3462"

## TODO nf-core: Add a description of all of the variables used as output

output:

  - bam:

      #

      ## TODO nf-core: Delete / customise this example output

      - "*.bam":

          type: file

          description: Sorted BAM/CRAM/SAM file

          pattern: "*.{bam,cram,sam}"

          ontologies:

            - edam: "http://edamontology.org/format_25722"

            - edam: "http://edamontology.org/format_2573"

            - edam: "http://edamontology.org/format_3462"

  - versions:

      - "versions.yml":

          type: file

          description: File containing software versions

          pattern: "versions.yml"

authors:

  - "@mathysgrapotte"

maintainers:

  - "@mathysgrapotte"