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b/conf/test_stub.config |
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// for now it needs either crg config or local config to be given by the user |
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// TODO make this config stand alone. No need for other configs. |
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stubRun = true |
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params { |
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config_profile_name = 'Test stub profile' |
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config_profile_description = 'stub run to check pipeline function' |
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// Input data |
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data = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_stimulus.csv" |
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data_config = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic.yaml" |
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model = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_model.py" |
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model_config = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_model_cpu.yaml" |
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} |
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process { |
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// Limit resources so that this can run on GitHub Actions |
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resourceLimits = [ |
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cpus: 2, |
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memory: 6.GB, |
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time: 6.h |
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] |
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container = 'quay.io/biocontainers/gawk:5.1.0' |
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} |