--- a +++ b/conf/test_stub.config @@ -0,0 +1,26 @@ +// for now it needs either crg config or local config to be given by the user +// TODO make this config stand alone. No need for other configs. + +stubRun = true + +params { + config_profile_name = 'Test stub profile' + config_profile_description = 'stub run to check pipeline function' + + // Input data + data = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_stimulus.csv" + data_config = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic.yaml" + model = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_model.py" + model_config = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/deepmodeloptim/testdata/titanic/titanic_model_cpu.yaml" + +} + +process { + // Limit resources so that this can run on GitHub Actions + resourceLimits = [ + cpus: 2, + memory: 6.GB, + time: 6.h + ] + container = 'quay.io/biocontainers/gawk:5.1.0' +}