--- a
+++ b/conf/test_ibis_with_preprocessing.config
@@ -0,0 +1,50 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Nextflow config file for running minimal tests
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Defines input files and everything required to run a fast and simple pipeline test.
+
+    Use as follows:
+        nextflow run main.nf -profile test_ibis,<docker/singularity> --outdir <OUTDIR>
+
+----------------------------------------------------------------------------------------
+*/
+
+params {
+    config_profile_name        = 'Test ibis profile - with preprocessing'
+    config_profile_description = 'Minimal ibis test dataset (with preprocessing) to check pipeline functions'
+
+    // Input data
+    data                 = params.pipelines_testdata_base_path + 'deepmodeloptim/testdata/ibis/ibis_SP140/SP140_ghts.peaks'
+    data_config          = params.pipelines_testdata_base_path + 'deepmodeloptim/testdata/ibis/data.yaml'
+    model                = params.pipelines_testdata_base_path + 'deepmodeloptim/testdata/ibis/ConvBasic_withEfficientKAN.py'
+    model_config         = params.pipelines_testdata_base_path + 'deepmodeloptim/testdata/ibis/ConvBasic_withEfficientKAN.yaml'
+    preprocessing_config = params.pipelines_testdata_base_path + 'deepmodeloptim/testdata/ibis/ibis_SP140/preprocessing.yaml'
+    genome               = 'GRCh38'
+    bed_peak_size        = 40
+
+    // output
+    save_data    = true
+}
+
+// Limit resources so that this can run on GitHub Actions
+process {
+    maxRetries = params.max_retries
+    errorStrategy = params.err_start
+
+    withLabel:process_low {
+        cpus   = { 1                    }
+        memory = { 4.GB * task.attempt  }
+        time   = { 10.m  * task.attempt }
+    }
+    withLabel:process_medium {
+        cpus   = { 2                    }
+        memory = { 6.GB * task.attempt  }
+        time   = { 30.m  * task.attempt }
+    }
+    withLabel:process_high {
+        cpus   = { 4                    }
+        memory = { 8.GB * task.attempt  }
+        time   = { 1.h  * task.attempt  }
+    }
+}