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b/conf/base.config |
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/* |
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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nf-core/deepmodeloptim Nextflow base config file |
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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A 'blank slate' config file, appropriate for general use on most high performance |
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compute environments. Assumes that all software is installed and available on |
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the PATH. Runs in `local` mode - all jobs will be run on the logged in environment. |
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---------------------------------------------------------------------------------------- |
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*/ |
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process { |
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// TODO nf-core: Check the defaults for all processes |
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cpus = { 1 * task.attempt } |
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memory = { 6.GB * task.attempt } |
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time = { 4.h * task.attempt } |
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errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' } |
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maxRetries = 1 |
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maxErrors = '-1' |
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// Process-specific resource requirements |
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// NOTE - Please try and reuse the labels below as much as possible. |
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// These labels are used and recognised by default in DSL2 files hosted on nf-core/modules. |
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// If possible, it would be nice to keep the same label naming convention when |
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// adding in your local modules too. |
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// TODO nf-core: Customise requirements for specific processes. |
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// See https://www.nextflow.io/docs/latest/config.html#config-process-selectors |
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withLabel:process_single { |
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cpus = { 1 } |
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memory = { 6.GB * task.attempt } |
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time = { 4.h * task.attempt } |
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} |
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withLabel:process_low { |
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cpus = { 2 * task.attempt } |
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memory = { 12.GB * task.attempt } |
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time = { 4.h * task.attempt } |
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} |
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withLabel:process_medium { |
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cpus = { 6 * task.attempt } |
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memory = { 36.GB * task.attempt } |
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time = { 8.h * task.attempt } |
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} |
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withLabel:process_high { |
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cpus = { 12 * task.attempt } |
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memory = { 72.GB * task.attempt } |
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time = { 16.h * task.attempt } |
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} |
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withLabel:process_long { |
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time = { 20.h * task.attempt } |
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} |
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withLabel:process_high_memory { |
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memory = { 200.GB * task.attempt } |
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} |
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withLabel:error_ignore { |
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errorStrategy = 'ignore' |
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} |
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withLabel:error_retry { |
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errorStrategy = 'retry' |
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maxRetries = 2 |
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} |
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} |