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@article{zhou2015predicting,

  title={Predicting effects of noncoding variants with deep learning-based sequence model},

  author={Zhou, Jian and Troyanskaya, Olga G},

  journal={Nature methods},

  volume={12},

  number={10},

  pages={931--934},

  year={2015},

  publisher={Nature Publishing Group}

}

@article{alipanahi2015predicting,

  title={Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning},

  author={Alipanahi, Babak and Delong, Andrew and Weirauch, Matthew T and Frey, Brendan J},

  journal={Nature biotechnology},

  year={2015},

  publisher={Nature Publishing Group}

}

@article{quang2015danq,

  title={DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences},

  author={Quang, Daniel and Xie, Xiaohui},

  journal={bioRxiv},

  pages={032821},

  year={2015},

  publisher={Cold Spring Harbor Labs Journals}

}

@article{kelley2015basset,

  title={Basset: Learning the regulatory code of the accessible genome with deep convolutional neural networks.},

  author={Kelley, David R and Snoek, Jasper and Rinn, John},

  journal={bioRxiv},

  pages={028399},

  year={2015},

  publisher={Cold Spring Harbor Labs Journals}

}

@article{encode2012integrated,

  title={An integrated encyclopedia of DNA elements in the human genome},

  author={ENCODE Project Consortium and others},

  journal={Nature},

  volume={489},

  number={7414},

  pages={57--74},

  year={2012},

  publisher={Nature Publishing Group}

}

@article{kundaje2015integrative,

  title={Integrative analysis of 111 reference human epigenomes},

  author={Kundaje, Anshul and Meuleman, Wouter and Ernst, Jason and Bilenky, Misha and Yen, Angela and Heravi-Moussavi, Alireza and Kheradpour, Pouya and Zhang, Zhizhuo and Wang, Jianrong and Ziller, Michael J and others},

  journal={Nature},

  volume={518},

  number={7539},

  pages={317--330},

  year={2015},

  publisher={Nature Publishing Group}

}

@article{koutnik2014clockwork,

  title={A clockwork rnn},

  author={Koutnik, Jan and Greff, Klaus and Gomez, Faustino and Schmidhuber, Juergen},

  journal={arXiv preprint arXiv:1402.3511},

  year={2014}

}