version: 2.1

jobs:
  build:
    docker: 
      - image: quay.io/widen/ubuntu:18.04-ubuntu1804-20200213
    steps:
      - checkout # check out the code in the project directory
      - run: chmod +x .circleci/setup_conda.sh
      - run: apt-get update
      - run: apt-get install -y zlib1g wget
      - run: ./.circleci/setup_conda.sh
      - run:
          name: Make Composer executables available globally
          command: |
            echo 'export PATH=/root/miniconda/bin/:$PATH' >> $BASH_ENV
            source $BASH_ENV
      - run: chmod +x tests/tests.R
      - run: dsComputeBEDDensity --input tests/input/genome_genes.bed --chromSize tests/input/genome_genes_chrom.sizes --windowSize 1000 -o tests/output/tmp_dsComputeBEDDensity
      - run: dsComputeGCCoverage --input tests/input/genome.fa --windowSize 1000 -o tests/output/tmp_dsComputeGCCoverage
      - run: dsCompareCurves -i tests/input/deeptools_matrix.txt -o tests/output/tmp_dsCompareCurves -b 50
      - run: Rscript tests/tests.R