--- a +++ b/tests/testthat/fasta/x.fasta @@ -0,0 +1,99 @@ +>CP021420.1 Akkermansia muciniphila strain YL44 genome +ATTCCGAAGTGCTGGATGCGGGTCAGACGGGCGGCATTGATGAAATGTCCATCGTCATTGAGCACGAAGA +CCTTCCGGCTCTGGCTGCCGGAAAGAAGATCACGCTGACCCTGGAAGCCTCCGGGGATGGCGATAGCTGG +GCCGAGGTGCCGGGGTTCTCCCTGGCATCTGCGGCGGGAGAAGAAGCGGGAGCTCTTGCGAACAGCATTG +CCGGACGGGCTCCCTATGGCATGGGACGCTACATCCGGCTCAAGGCTGTGGCAGACACCGCCAGCGGCGA +CAATACCGCCGCCAAATGTGAACTCTCCATCCGCGTGTAACCGTCATGGCGCTGGTCCAGATCACGGAAA +ACACTCTGCGGGCCTTCCTGGCGGACGCTGAAATCGCGGCGTTTGACTCGGCAGGAGCGGAAGGGGATTA +CCCGGAACGGGCCGGCGCCCTGATCAGGACGACGTGCAACCTCGTCGCCGGAATCGTTAATTCTTCCGGG +AAATATCCCATCCTGGCAACAGGTCAGGACAGGGTGCCGGAAGAACTGGAACACCCGACGCTTGTCTGGA +TCCGTCACGCCATGCTGGCCGATTTGCCCGACATGGGCGACCTGGAAGGATCCCCCCGCGCCAAGCAGTA +CAGCACGGCAAGCGAGATTTTCCGGGCCGTCCGGGAGGGCAGGTTTTATCTTGCCCCCTACGATTCGGAG +AGTGGCGGCGTAGAGGTGTACGGAGCCGGGCAGCCCTATCAGAACTGGTGTGAACTATGAGTGCTTTACC +CGCAAGCCCGCGCATCGCCGCCGGGGAAAAAATCTATCGGAAAATCATTACCCTGTGTGCCCGTTACAAC +AGCGGGGAGGATCCCGGCATTGTCATGCGCGGATGGGATGCCGACCTGAAAACCCTGATTACTCAAAAGC +TGTCCAGGCTGGGAATCTGCGTGCTGGTATGTGCCCCGAAACGAAAACCCCTGCAGGAACAGGGAGGCAC +GAATGCCGTCATTCTGACAACAAAAATCGTCATTGAAAGCAATCCCCTCCTGAAAAAATCCGACGCAACC +GCCGTCCTCGGCTGGGATGCGGACGATCTGGCAGACCTGCTCGCCATCGGGCTTGACGGGCATCGGGAAC +CGGGCTGGCTCACCTGCATGAAGCTCAAAGTCACAGGCACGGAGTCAAGCCGGGTACAGATGGCCAACAA +GGCTGTTACGCTCACCCTTGAACAAACCACCATATTGAAACATGGCAACTAAACCCACCATCGCCGCGGC +CCAGGAGGCCGCTACTGCTCCGGCGCCCCGCATCGTCAAATGCCGGGTGGCCGTCAACAAGCTGGAACTC +CCTCACGGCATCGCCGCGCGGGGAAAAATCGTCCACATCCCGGAAGACGTGTACAAAGTCCACGCCGACG +CCGGGAAAGTGACCTTTATTGACTACGTAAGAAGCTAACAACCATGTCAGAACTCTACAACAAGGAAATG +CTGGTCGGCACCTTTCTCGACCTGTGCCCGTTCGGAACGACAGTCACGGCCGGAAGCGGCACGGACACGG +TGGACGAGCATTTCAAGCCGGCGAAGGACTCCGACGCCTGGATGATTGCCAACGAAGTCATCGACTACAA +AATCACGCCGACCACGGAAGACGACGCCCGCACGGTATTTTCCCGCGACACGACCTCCTATGTGACGCGG +AAGAACACCAAAGTGACGGGCAACACCATCGAGATTAACTCCACGGAGGTTAATCCGGTCTGCTGGCAGG +TGATTTACCAGTGCGACAGGCTGGAAGCCGGGAAGGAAGTGCAGCCCTTTTCCCGGAACATCTACGGGCA +AAAGGTATGGGCGCGCCTCACCAAATACCAGGAAGACAAAAAAGAAATGATGGTCCTGGAAGTCGCGGCG +CTGCTCAAGGTGGAAATCCCCACGGAAAACAACAAGCTGATCACGCCGAAATTGACGCTTGAAGTGATAC +CGTCCTCCCTGAATTCCCTGACGCCCACGGAAGAAATCGCCTTCCCGGCCTCCGACGGGGCATGACAGCC +GGGGCCGCCCCTCTGTTTGCATGGGGAGGGGCGGCCCCTGTTTCCCCCACCATTATTGAGGCATGGACAC +GACCGTCTCTCCCTTTTCCATTACCTTTGACGGGCGCCCCGTCGTGCGCGCCGGGGAATTCCTGCTCGAC +TCCCTGCCGGAACACGCTTTCCCGGTGCAGTTCGGCACGTCCGCCACGCCGATCATCAACAGCCCGTTCC +CCAGGCTGGACGCATTCGGCAACCTGTCCCTGTCCTTCACCATCTCCACCGTGCGGGAATGCGCCTCCCA +CATGGACGCGTGGAACGCCTTTTACGAATGGCTCAACGAATGGAAAACGGCGGGGAAAGGGGAATGGGCC +TGGACCGACGCCTGCGGCCGTGAACAGCGCTTTGAAGCCATCATCGCCGACGCCGAGCCGAAGGTTCAGG +GCCTGCGCCTTATTGTCTCCTACAACTTCACCCTGGGCCGCCCCCTATGAAAACCATTGACGTATCTTCC +GCCGACTTCCTGGACATGGCCGAAAGCCCGTCCTACAACCGGCTGTCCTTCGGGGGAGCCTCCGTCTCCT +TCCGCGTGCCTGTCTCCCGGTTTGCCTCCTGCCCGTTTGAAGAAGGGGAAATAGTGAAAGTCGTCTGGCG +CGGGAAAACCCTGCTCATCGGCCCGGTCATCGACCTGGAACATTCCCTTGAAGGAACCTCCGAGAGCTGG +GACATCAGGATTTGCGATTACTGGTGGAACCTGAGCAACATCCAGTACTTCGTGAATGGCCGCGCCAACG +GCATCTTTGCCGAATACCGCCGGGGCACAGGCGGAAGCGGTCAGGAAAAACAGGCGACCGCGAACATCCG +GGACGCCCTCTCCGGAGTTCTGGACCACGCCGTCAGCACGGCCCTAGTTCCCATCAAATACGACCTCCGG +ATAGACAAGGATGCCGAAATCATTCCGTTTGCCTACTCGTCGGAAACGTATGCCTCCCTGCTTTCCCAGA +TCCAGAAATGGCGCCCCAATATGGCCGCGTGGTTTGAATACGGCGCGGACGACTCCGCCACGCTGGTCAT +TGCCGACCATGCCGCCCTGCCGGATGTCGTGCTCGACTTGTCCGCCGTGGACGTAAGCGCCCTGTCCCTC +AAGGCGCGTCCCGATCTGGTGCCTCCGGCCGTGGGGCTGACCTGCAACGCCTCCGTTGTCTCCCGGATTC +AGCGCGCGCTGGCCGTCTATCCCTCAGGCGCCTCCCTGTCCCAGCCCTATGTGGTGACGGCGGAAGTGGA +CGTTCCGGGCGGCGTCAAGGTCTCCGACACTGCCGGGCAATACAGCCCTGCGGAAACGGACTCGCTGGGT +TACGACGCCCCGCGGATGATTGTCCGGGGAGACAAATTCCCGACCGGCACGGCCCAGTGGGCGGCCCGCG +TCAAACGCTGGGCTCCGGCCCTGGAGGATTGCGCCGGCCTGGAAGTGGCGGCCAGTCCGAAAATTACGTC +CATCACGCCGGCTGACGCGGAACACCGGGGATACAGCAATGCGGCCATCACCCACGAACTGACCTCCGGC +CAGATAAACGGCAGGAGCGCAAGAATCAAATGGGGCAAGGTCCGGGTGGATTTGCGGGTGCGGGCGACGG +AGCCCCCCGACACGGTGAAGCAATATTTTCCGGAATACGGCGGAAAATCCGGAACCGGGGACCGCTGGAT +CGGAACATTGACGTTTGAAGTGACCACGACGAATGTCGGCTACGCGTCCTACCGGGTGGACAGGGCAGGG +ACGGTGGAAAACGTATCCGACGACGGCGGAAGCCCCGGAGACGACGAAACATCGGGCAGCTACGACACCT +CCGCACTGTATAAAAATTTCCTGAAATCCTACTACGAAGCCACCCGCGCGCTGCCCTATGACGGATCCGC +GACCGTCCACGACGACTTTGACCAGGTCTGCGGGGGGCGCCTCTCCATCACGGGAGGATTGAAAGAATGG +GAAACCATGCGGTCCGTCATCCAGGAAATATCCCTCGACCTTAAAACGGGAGTTTCCGACGTGACGGTGG +GGGCCCCGGAACAGATCTCCCTGCAGGACTCCATCGACCGGAGCCGGCAGCTTGCCGAGGCGCTGCGCCG +GACGGCCTGGGCGGACTCGTCCACGTCTTCCGGGGGAGGTTCTTCGGGCGGGGGATCCGGCAGCGGAGGC +GGAGGCTCTTCCGGAGCGGACGATGAAGTCCCGGAGCTTCCCAGCGTCGGGCCGTCCGTAAAACTGCTGC +AGGCCCAGGAGCCTCCCGCGTGGGGAACAAGCGCCGTTGAGGTGGGATTCCAATGCCGCCTGTCTTACGG +GAGCGACGGCAAGGTGTCCGATGCCTACATCCGCCAGGGGAAGGCCGTTTATGCCGGCAGCTACATCGGG +GGGCTGCTTCCGGAAGGGGACGGCTCCGGGGGATGGGTGAAAAGCCCCGTCACTTCCGGGGAAATCTGGC +TCAAGATCCAGTTGGACAAGGACACGAAATACCTCGGATCCTCTCTGTCCGCCGCGGGCGGCGTCTCCGA +CCCCGTCAGGCTCGCGGAGGAAGACCGGAAAACCCCTTATGAATATTATTTCCATCTGGCCACCATCGAC +GGCAACAAGGTGGTGCAGCACCAGGCGGGCACGGTTTATCTCCAAATCCACCCGGGAACCTTCGGCCCCT +CCGGAATGTCATGATCAGGATATACACCTTCACCTATGCCGGAGACGCGCAGGAAGCCGTGGCCTGCGTC +CGGTGCGCCAGGACGGCTCTTCCGGAGGCGGTAGTTACGGTGGTGGACGACAGCGCCGCCCCGGTGCCCC +CGGAGGACAAGAGGGCCCTTGTAGCGCATGGGGCGCGGTATCGCCGGAGTTCTTTCCCCCGCTGCGGCAA +CCTGCGCGGCCCGGAGTGCGTCCGGGGAATTATTGCCACGCTGGCCGGGGGGGCGGCGGATGGCGACACC +GTCGTCAAGATTGACTCCGACACGGCGCTTCTGTCGGGCGGCTGGGTCAGGGAAATGAAACACAACGGGC +TTGCGCTGCACGCCGCCGGGTACCTGGTCCCCCGGAACCCGTCCGAACGGTCCGCCTACGGAAATTGCTA +CGCCCTGAGCGGACGGGCGTCCAGGATGGCCGCCGAAGCGCTGGAATGCGCCGCCATCCCCCCGCTCGCC +CCGGAAGACCTCACCATCTGCCGGGCCGTCATGGATGTCTGCGGCCGGGAGCGTGTCCGGCTTGACGAGC +CGTGGACGCCCCTGAACCGGGCCGGGCGGTGGTCCTGGTGGAACTGGGACAGCCGGACGGCGAACCCGGA +GGATTATGCCCGCAGCTATGACGTGGTGAGCGTCGGCAATCCCCGGCCTCCCCACGTTCCCAAAAACGCC +CGCCGGGAAGTCATGCGCGCTCTGTGCGACGCCCGTTTGAATCTCAACAGCCAATCAATAGAACCATGTC +AGACAGAAACCTGAACATCAATATCAGAACGACCGCCGACACCTCCGGCGCCACTCAAGCCGCCGCATCC +TTGGACAGGATACGGGAATCCGGCGAATCCATTTCGCAGACTTCCGGCGTGATGGACCGGATCGCAGATT +CTCTTTCCCGTGTCAAAACGGCTGCCGGGGAAACCGGCGACGCCATGAAGGACGGCATGGGCGCGGAATA +TGAAAAAGCCCTGGAAAACGCCAATTCCAAACTTGACCAATACGCCGACGCCCTGACCGCCGCCGGCTCC +CGGATGAAAGCCGCCTTTAACGACAACCCGGGATTGACCGGGTTTATTGACGAAGTCACCAACGCCGTGC +TGACCTCCGAGGAATTCAGGAAGAAGCTGGAACAGGTGGATGACGTCTTTGAAGTCCTCAACAACAAAAT +GTCTGATTTGGATCTCGGGGCGAAATGGGGAGATGACCTTGACGAAAACCTTCAACAAATCATCGACGGC +TACAACAAGGAAATGGACGCGGCCGACAAGGCCGCGGAAAAGGCGGAAGCCGCGGAGGCCCGGAAGCAGC +AGGCAGCCGCCGCCACGGTGGAACGGCTGGAGGCCAACAACCGCCGCGCCTCTGCCACCTATGAGGAATT +GCAGGCCGAATTGGAATCCTACATTGCCAAGTTGGAAGAAGCCCGGAAGGCCGGGGACAACGTGGCCCAG +GCGGACGCCCTGAAGAATATCCAGGACCTGGGACGGCGCATCAAGACGGCCGGAGATGCCGGGCAACTCA +CCTCCACGCAGGTCAAGGGGCTGGCGGGGCAGATTACCATTGCGGCAACGCGCATCCTGGGCATGTCCAG +CTCGCTCCGGGGAGCTATCCCGTTCATTCATTTATTCGGAACCACCATCAAAACGGCGATGGGGCCGCTG +GGCTGGGCCATGCTGCTGATCCAGGGGCTGACCGCCGGCATTACCGCTTTGATTGACCACTTCAAGGCCA +AAAGCGACGAATTGGAGCGGCAGGCGGAACAGGCAACCGAAAGGATGAAAAAACGTGCCAGGGATACTGC +CGAATCTATCAAAAAGAGTTATGAAGCTATCCAGGACTATAACAAAGCCGACCGAACACAGGAAATCAAC +AAAGGGTTTGAAGACTTTGTGAAGGGCATTACGACGCAATACCGTTTGCAAACGCAGGAGATTGAACGGC +AAATCCAGCTACGGAGGGAGGAAGCCGCCCGCCAGAAGGGGATTGACACGCAGGAAGCCGAACTTGCCCG +CGTGAAGTTGGACAATGACTTTGAAGACGGAAAAATCACCGAGAGGCAACGGGACTACGGCATGATGATG +ATCAACCAGAATCTTGACGATAAAATACGCCGCCGAGATCTGGAAGTAGCGCAGAAGGAATTCATGGACT \ No newline at end of file