--- a +++ b/DESCRIPTION @@ -0,0 +1,73 @@ +Package: deepG +Title: Deep Learning for Genome Sequence Data +Version: 0.3.1 +Encoding: UTF-8 +Authors@R: c( + person(given = "Philipp", + family = "Münch", + role = "aut", + email = "philipp.muench@helmholtz-hzi.de"), + person(given = "René", + family = "Mreches", + role = c("aut"), + email = "mr.francois@gmx.de"), + person(given = "Martin", + family = "Binder", + role = c("aut", "cre"), + email = "developer.mb706@mb706.com"), + person(given = "Hüseyin Anil", + family = "Gündüz", + role = "aut", + email = "anil.guenduez@stat.uni-muenchen.de"), + person(given = "Xiao-Yin", + family = "To", + role = "aut", + email = "x.to@stat.uni-muenchen.de"), + person(given = "Alice", + family = "McHardy", + role = "aut", + email = "alice.mchardy@helmholtz-hzi.de") + ) +Description: Training and applying deep learning models to genome sequence data. + Applications include data processing, model fitting, model evaluation, model optimization and inference. + A few genome datasets for testing are provided, as is the possibility to extract deep representations. +License: LGPL (>= 3) +URL: https://github.com/GenomeNet/deepG, + https://deepg.de/ +BugReports: https://github.com/GenomeNet/deepG/issues +Roxygen: list(markdown = TRUE) +Depends: + R (>= 3.5.0) +Imports: + hdf5r, + keras, + tensorflow, + reticulate, + data.table, + abind, + stringr, + purrr, + magrittr, + dplyr, + ggplot2, + yardstick, + jpeg, + png, + microseq, + checkmate, + readr +NeedsCompilation: yes +RoxygenNote: 7.3.1 +Suggests: + testthat, + circlize, + pROC, + PRROC, + ComplexHeatmap, + knitr, + rmarkdown, + devtools, + spelling +VignetteBuilder: + knitr +Language: en-US