[0ce940]: / tests / test_train.py

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"""test run gin -> TODO rename to bpnet
"""
from kipoi.data import Dataset
import numpy as np
import os
# from gin_train.cli.gin_train import gin_train
# import gin
# @gin.configurable
# class Dummy(Dataset):
# def __init__(self, n,
# incl_chromosomes=None,
# excl_chromosomes=None):
# self.n = n
# def __len__(self):
# return self.n
# def __getitem__(self, idx):
# return {"inputs": np.array([idx, idx + 1]),
# "targets": idx // 2
# }
# @gin.configurable
# def dummy_model(n_hidden, lr=0.04):
# import keras.layers as kl
# from keras.models import Model
# inp = kl.Input((2,))
# x = kl.Dense(n_hidden)(inp)
# x = kl.Dense(1)(x)
# model = Model([inp], x)
# model.compile('Adam', loss="mse")
# return model
# @gin.configurable
# def train_valid_dataset(dataset_cls):
# return dataset_cls(), dataset_cls()
# def test_gin_train(tmpdir):
# run_id = 'test'
# gin_train("tests/data/example.gin", str(tmpdir), run_id=run_id, force_overwrite=True)
# output_dir = os.path.join(str(tmpdir), run_id)
# # produced files
# # assert os.path.exists(os.path.join(str(tmpdir), "log/stdout.log"))
# assert os.path.exists(os.path.join(output_dir, "config.gin"))
# assert os.path.exists(os.path.join(output_dir, "model.h5"))
# assert os.path.exists(os.path.join(output_dir, "history.csv"))