[0ce940]: / tests / cli / test_export_bw.py

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"""Test bpnet_export_bw
"""
import os
from bpnet.cli.export_bw import bpnet_export_bw
import keras.backend as K
EXPECTED_FILES = ['Task1.contrib.counts.bw',
'Task1.contrib.profile.bw',
'Task1.preds.pos.bw',
'Task1.preds.neg.bw',
'log'
]
def test_export_bw_w_bias(tmp_path, trained_model_w_bias):
K.clear_session()
bpnet_export_bw(str(trained_model_w_bias),
output_prefix=str(tmp_path) + '/', # make sure we have a trailing slash
contrib_method='grad',
scale_contribution=True)
output_files = os.listdir(tmp_path)
for f in EXPECTED_FILES:
assert f in output_files
def test_export_bw(tmp_path, trained_model, regions):
K.clear_session()
bpnet_export_bw(str(trained_model),
output_prefix=str(tmp_path) + '/', # make sure we have a trailing slash
contrib_method='grad',
regions=str(regions))
output_files = os.listdir(tmp_path)
for f in EXPECTED_FILES:
assert f in output_files