--- a +++ b/examples/chip-seq/dataspec.yml @@ -0,0 +1,27 @@ +fasta_file: ../data/mm10_no_alt_analysis_set_ENCODE.fasta +task_specs: + Oct4: + tracks: + - ../data/chip-seq/Oct4/counts.pos.bw + - ../data/chip-seq/Oct4/counts.neg.bw + peaks: ../data/chip-seq/Oct4/idr-optimal-set.summit.bed.gz + Sox2: + tracks: + - ../data/chip-seq/Sox2/counts.pos.bw + - ../data/chip-seq/Sox2/counts.neg.bw + peaks: ../data/chip-seq/Sox2/idr-optimal-set.summit.bed.gz + Nanog: + tracks: + - ../data/chip-seq/Nanog/counts.pos.bw + - ../data/chip-seq/Nanog/counts.neg.bw + peaks: ../data/chip-seq/Nanog/idr-optimal-set.summit.bed.gz + +bias_specs: + input: + tracks: + - ../data/chip-seq/input-control/counts.pos.bw + - ../data/chip-seq/input-control/counts.neg.bw + tasks: + - Oct4 + - Sox2 + - Nanog