--- a
+++ b/conda-env.yml
@@ -0,0 +1,43 @@
+name: bpnet
+channels:
+- bioconda
+- pytorch
+- conda-forge
+- defaults
+dependencies:
+- python=3.6
+
+# genomics
+- pybedtools==0.7.10
+- bedtools==2.27.1
+- pybigwig>=0.3.10
+- pysam==0.15.3
+- genomelake==0.1.4
+
+- pytorch  # optional for data-loading
+- cython
+- h5py==2.9.0
+- numpy==1.18.5
+- tqdm==4.46.1
+- scipy==1.4.1
+- statsmodels==0.11.1
+- scikit-learn==0.21.3
+
+- pandas==1.0.3
+- fastparquet==0.4.0
+- python-snappy
+
+- nb_conda
+- pip
+- pip:
+  - git+https://github.com/kundajelab/DeepExplain.git
+
+  # ML & numerics
+  - tensorflow>=1.7,<=1.14  # tensorflow-gpu==1.7 for gpu
+  
+  - kipoiseq==0.3.4
+  - kipoi==0.6.25
+  - joblib==0.15.1
+
+  # bpnet package
+  - .[dev,extras]  # install the local basepair package. All the other required pip packages are specified in the setup.py