--- a
+++ b/.circleci/deploy_docs.bash
@@ -0,0 +1,88 @@
+#!/bin/bash
+set -eou pipefail
+
+# References:
+#  - https://github.com/bioconda/bioconda-utils/blob/master/.circleci/build-docs.sh
+#  - https://docs.travis-ci.com/user/encrypting-files
+#  - https://gist.github.com/domenic/ec8b0fc8ab45f39403dd
+
+# ----------------------------------------------------------------------------
+#
+# Repository-specific configuration
+#
+# ----------------------------------------------------------------------------
+
+# Note that the keypair needs to be specific to repo, so if ORIGIN changes, the
+# keypair (docs/key.enc, and the corresponding public key in the setting of the
+# repo) need to be updated.
+BRANCH="master"
+ORIGIN="kundajelab.github.io"
+GITHUB_USERNAME="kundajelab"
+TARGET_FOLDER="bpnet/"
+
+# DOCSOURCE is directory containing the Makefile, relative to the directory
+# containing this bash script.
+DOCSOURCE=`pwd`/docs/
+
+# DOCHTML is where mkdocs is configured to save the output HTML
+DOCHTML=$DOCSOURCE/site
+
+# tmpdir to which built docs will be copied
+STAGING=/tmp/${GITHUB_USERNAME}-docs
+
+# Build docs only if ci-runner is testing this branch:
+BUILD_DOCS_FROM_BRANCH="master"
+
+# ----------------------------------------------------------------------------
+#
+# END repository-specific configuration. The code below is generic; to use for
+# another repo, edit the above settings.
+#
+# ----------------------------------------------------------------------------
+
+if [[ $CIRCLE_PROJECT_USERNAME != kundajelab ]]; then
+    echo "$CIRCLE_PROJECT_USERNAME != kundajelab"
+    exit 1
+fi
+
+REPO="git@github.com:${GITHUB_USERNAME}/${ORIGIN}.git"
+
+# clone the branch to tmpdir, clean out contents
+rm -rf $STAGING
+mkdir -p $STAGING
+
+SHA=$(git rev-parse --verify HEAD)
+git clone $REPO $STAGING
+cd $STAGING
+git checkout $BRANCH || git checkout --orphan $BRANCH
+# remove the existing target folder
+rm -rf ${TARGET_FOLDER}
+
+# copy over the docs to tmpdir
+cd ${DOCSOURCE}
+cp -r ${DOCHTML} $STAGING/${TARGET_FOLDER}
+
+# commit and push
+cd $STAGING
+
+# committing with no changes results in exit 1, so check for that case first.
+# if git diff --quiet; then
+#    echo "No changes to push -- exiting cleanly"
+#     exit 0
+# fi
+
+# Ignore branch
+# if [[ $CIRCLE_BRANCH != master ]]; then
+#     echo "Not pushing docs because not on branch '$BUILD_DOCS_FROM_BRANCH'"
+#     exit 0
+# fi
+
+
+# Add, commit, and push
+echo ".*" >> .gitignore
+git config user.name "Circle-CI-kundajelab"
+git config user.email "${GITHUB_USERNAME}@users.noreply.github.com"
+git add -A .
+git commit --all -m "Updated docs to commit ${SHA}."
+echo "Pushing to $REPO:$BRANCH"
+git push $REPO $BRANCH &> /dev/null