--- a +++ b/README.md @@ -0,0 +1,29 @@ +# ai_genomics + +## Setup + +- Meet the data science cookiecutter [requirements](http://nestauk.github.io/ds-cookiecutter/quickstart), in brief: + - Install: `git-crypt`, `direnv`, and `conda` + - Have a Nesta AWS account configured with `awscli` +- Run `make install` to configure the development environment: + - Setup the conda environment + - Configure pre-commit + - Configure metaflow to use AWS + +## Dependencies + +Download spaCy's en_core_web_sm 3.1.0 pipeline: + +```bash +pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.1.0/en_core_web_sm-3.1.0.tar.gz +``` + +## Contributor guidelines + +[Technical and working style guidelines](https://github.com/nestauk/ds-cookiecutter/blob/master/GUIDELINES.md) + +--- + +<small><p>Project based on <a target="_blank" href="https://github.com/nestauk/ds-cookiecutter">Nesta's data science project template</a> +(<a href="http://nestauk.github.io/ds-cookiecutter">Read the docs here</a>). +</small>