# ai_genomics

## Setup

- Meet the data science cookiecutter [requirements](http://nestauk.github.io/ds-cookiecutter/quickstart), in brief:

  - Install: `git-crypt`, `direnv`, and `conda`

  - Have a Nesta AWS account configured with `awscli`

- Run `make install` to configure the development environment:

  - Setup the conda environment

  - Configure pre-commit

  - Configure metaflow to use AWS

## Dependencies

Download spaCy's en_core_web_sm 3.1.0 pipeline:

```bash

pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.1.0/en_core_web_sm-3.1.0.tar.gz

```

## Contributor guidelines

[Technical and working style guidelines](https://github.com/nestauk/ds-cookiecutter/blob/master/GUIDELINES.md)

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<small><p>Project based on <a target="_blank" href="https://github.com/nestauk/ds-cookiecutter">Nesta's data science project template</a>

(<a href="http://nestauk.github.io/ds-cookiecutter">Read the docs here</a>).

</small>