--- a
+++ b/shepherd/run_patients_like_me.sh
@@ -0,0 +1,18 @@
+# Bash script to train SHEPHERD for patients-like-me
+
+# Command to run this bash script:
+# bash run_patients_like_me.sh
+
+# Command to run with the best hyperparameters from the paper
+python train.py \
+        --edgelist KG_edgelist_mask.txt \
+        --node_map KG_node_map.txt \
+        --patient_data disease_simulated \
+        --run_type patients_like_me \
+        --saved_node_embeddings_path checkpoints/pretrain.ckpt \
+        --sparse_sample 300 \
+        --lr 5e-05 \
+        --upsample_cand 1 \
+        --neighbor_sampler_size 15 \
+        --lmbda 0.7 \
+        --kappa 0.09000000000000001
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