# (Packages/Libraries) Miscellaneous

from setuptools import setup, find_packages

from setuptools.command.install import install

class CustomInstall(install):

    def run(self):

        print("Installing IntelliGenes...")

        install.run(self)

        print("Installed IntelliGenes!")

setup(

    name = 'intelligenes',

    version = '1.1',

    author = 'William DeGroat',

    author_email = 'will.degroat@rutgers.edu',

    description = 'IntelliGenes: AI/ML pipeline for predictive analyses using multi-genomic profiles.',    

    url = 'https://github.com/drzeeshanahmed/intelligenes',

    packages = find_packages(),  

    classifiers = [

        'Programming Language :: Python :: 3',

        'Programming Language :: Python :: 3.6',

        'Programming Language :: Python :: 3.7',

        'Programming Language :: Python :: 3.8',

        'Programming Language :: Python :: 3.9',

        'Programming Language :: Python :: 3.10',

    ], 

    install_requires = [

        'altgraph==0.17.4',

        'cloudpickle==3.0.0',

        'contourpy==1.2.0',

        'cycler==0.12.1',

        'fonttools==4.47.2',

        'joblib==1.3.2',

        'kiwisolver==1.4.5',

        'llvmlite==0.42.0',

        'macholib==1.16.3',

        'matplotlib==3.8.2',

        'numba==0.59.0',

        'numpy==1.26.3',

        'packaging==23.2',

        'pandas==2.2.0',

        'pillow==10.2.0',

        'pyinstaller==6.3.0',

        'pyinstaller-hooks-contrib==2024.0',

        'pyparsing==3.1.1',

        'python-dateutil==2.8.2',

        'pytz==2024.1',

        'scikit-learn==1.4.0',

        'scipy==1.12.0',

        'seaborn==0.13.2',

        'shap==0.44.1',

        'six==1.16.0',

        'slicer==0.0.7',

        'threadpoolctl==3.2.0',

        'tqdm==4.66.1',

        'tzdata==2023.4',

        'xgboost==2.0.3',

    ],

    python_requires = '>=3.6',

    entry_points = {

        'console_scripts': [

            'igenes_predict=intelligenes.classification:main',

            'igenes_select=intelligenes.selection:main',

            'igenes=intelligenes.intelligenes:main',

        ]

    },

    include_package_data  = True,

    license = 'GNU General Public License v3.0',

    cmdclass = {

        'install': CustomInstall,

    }

)