DeepMod / Git / Commit [c66173]

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Commit [c66173] main

Initial commit

Authored by: MarcoTheBlack 2025-04-21

Browse code at this revision

Parent: [e0fe92]

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added	DeepMod_tools/cal_EcoliDetPerf.py
added	DeepMod_tools/generate_motif_pos.py
added	DeepMod_tools/hm_cluster_predict.py
added	DeepMod_tools/sum_chr_mod.py
added	INSTALL
added	LICENSE
added	README.md
added	bin/DeepMod.py
added	bin/DeepMod_scripts/EventTable.py
added	bin/DeepMod_scripts/MoveTable.py
added	bin/DeepMod_scripts/__init__.py
added	bin/DeepMod_scripts/myCom.py
added	bin/DeepMod_scripts/myDetect.py
added	bin/DeepMod_scripts/myGetFeatureBasedPos.py
added	bin/DeepMod_scripts/myMultiBiRNN.py
added	docs/Description of well-trained models.md
added	docs/Install.md
added	docs/Reproducibility.md
added	docs/Results_explanation.md
added	docs/Usage.md
added	setup.py
added	train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/Cg.cov5.nb25.data-00000-of-00001
added	train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/Cg.cov5.nb25.index
added	train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/Cg.cov5.nb25.meta
added	train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/checkpoint

DeepMod_tools/cal_EcoliDetPerf.py Diff Switch to side-by-side view

DeepMod_tools/generate_motif_pos.py Diff Switch to side-by-side view

DeepMod_tools/hm_cluster_predict.py Diff Switch to side-by-side view

DeepMod_tools/sum_chr_mod.py Diff Switch to side-by-side view

INSTALL Diff Switch to side-by-side view

LICENSE Diff Switch to side-by-side view

README.md Diff Switch to side-by-side view

bin/DeepMod.py Diff Switch to side-by-side view

bin/DeepMod_scripts/EventTable.py Diff Switch to side-by-side view

bin/DeepMod_scripts/MoveTable.py Diff Switch to side-by-side view

bin/DeepMod_scripts/init.py Diff Switch to side-by-side view

bin/DeepMod_scripts/myCom.py Diff Switch to side-by-side view

bin/DeepMod_scripts/myDetect.py Diff Switch to side-by-side view

bin/DeepMod_scripts/myGetFeatureBasedPos.py Diff Switch to side-by-side view

bin/DeepMod_scripts/myMultiBiRNN.py Diff Switch to side-by-side view

docs/Description of well-trained models.md Diff Switch to side-by-side view

docs/Install.md Diff Switch to side-by-side view

docs/Reproducibility.md Diff Switch to side-by-side view

docs/Results_explanation.md Diff Switch to side-by-side view

docs/Usage.md Diff Switch to side-by-side view

setup.py Diff Switch to side-by-side view

train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/Cg.cov5.nb25.data-00000-of-00001

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train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/Cg.cov5.nb25.index

Binary file was added.

train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/Cg.cov5.nb25.meta

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train_deepmod/na12878_cluster_train_mod-keep_prob0.7-nb25-chr1/checkpoint Diff Switch to side-by-side view

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