#!/usr/bin/env python

import os,sys

import setuptools

with open("README.md", "r") as fh:

    long_description = fh.read()

setuptools.setup(

    name="DeepMod", # Replace with your own username

    version="0.1.3",

    author="Qian Liu",

    author_email="",

    description="A deep-learning tool to detect DNA modifications using Nanopore long-read sequencing data",

    long_description=long_description,

    long_description_content_type="text/markdown",

    url="https://github.com/WGLab/DeepMod",

    #packages=setuptools.find_packages(),

    packages=['DeepMod_scripts'],

    package_dir={'DeepMod_scripts': 'bin/DeepMod_scripts'},

    scripts=['bin/DeepMod.py', 'DeepMod_tools/cal_EcoliDetPerf.py', 'DeepMod_tools/generate_motif_pos.py', 'DeepMod_tools/hm_cluster_predict.py', 'DeepMod_tools/sum_chr_mod.py'],

    package_data={'train_deepmod': ['train_deepmod/*/*']},

    #data_files=[('train_deepmod', ['train_deepmod/*'])],

    classifiers=[

        "Programming Language :: Python",

        'Intended Audience :: Science/Research',

        "License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL)",

        "Operating System :: OS Independent",

    ],

)