--- a
+++ b/bin/DeepMod_scripts/myCom.py
@@ -0,0 +1,60 @@
+
+#
+# output level
+#
+OUTPUT_DEBUG=0;
+OUTPUT_INFO=1;
+OUTPUT_WARNING=2;
+OUTPUT_ERROR=3;
+
+#
+# base-pairing
+# 4 base types with case insensitive
+#
+na_bp = {"A":"T", \
+         "C":"G", \
+         "G":"C", \
+         "T":"A", \
+         "a":"t", \
+         "c":"g", \
+         "g":"c", \
+         "t":"a", \
+         "N":"N", \
+         "n":"n" \
+         }
+
+g_ACGT = ['A', 'C', 'G', 'T']
+
+acgt = na_bp.keys();
+
+#
+# get complementary base of a given base
+#
+def getComplementary(na):
+   com_na = []
+   for i in range(len(na)):
+      com_na.append(na_bp[na[i]])
+   ''.join(com_na[::-1])
+
+#
+# format the end of a folder
+#
+def format_last_letter_of_folder(cursub):
+   if not cursub==None:
+      if cursub[-1]=='/': return cursub;
+      elif cursub[-1]=='\\': return cursub[:-1]+'/';
+      else: return cursub+'/';
+
+#
+# default path of data in fast5 files
+#
+analyses_base = "Analyses"
+basecall_events_base = "Events"
+raw_base = 'Raw'
+reads_base = "Reads"
+signal_base = "Signal"
+basecall_fastq_base = "Fastq"
+
+
+
+