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<title>Features - DNAnalyzer</title> |
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content="Explore DNAnalyzer's advanced features for DNA sequence analysis, including codon detection, high coverage analysis, and more."> |
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<!-- Stylesheets --> |
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<span>Exclusive WSSEF Preview: </span> |
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<span> Transformer Architecture in Epigenomics!</span> |
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<a href="https://epiclassify.dnanalyzer.org" target="_blank" class="notification-link">Explore Now</a> |
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<a href="../index.html" class="logo"> |
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<img src="../assets/icons/Icon_Dark_BG.svg" alt="DNAnalyzer Logo"> |
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<span class="logo-text">DNAnalyzer</span> |
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<li><a href="../index.html">Home</a></li> |
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<li><a href="features.html" class="active">Features</a></li> |
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<li><a href="../analyzer/analyzer.html">Analyzer</a></li> |
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<li><a href="../server/server.html">Server</a></li> |
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<li><a href="../docs/docs.html">Docs</a></li> |
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<li><a href="../about/about.html">About</a></li> |
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</ul> |
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<div class="nav-buttons"> |
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<a href="https://github.com/VerisimilitudeX/DNAnalyzer" class="btn btn-secondary btn-sm"> |
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<i class="fab fa-github btn-icon"></i> GitHub |
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</a> |
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</nav> |
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<!-- Main Content --> |
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<main> |
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<section class="features-hero"> |
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<div class="container"> |
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<div class="features-hero-content"> |
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<h1>DNAnalyzer <span class="gradient-text">Features</span></h1> |
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<p>Advanced DNA analysis capabilities powered by machine learning, designed for researchers, |
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educators, and enthusiasts.</p> |
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</div> |
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</div> |
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</section> |
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<section class="section feature-highlights"> |
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<div class="container"> |
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<div class="section-title"> |
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<h2>Key Capabilities</h2> |
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<p>Our comprehensive suite of DNA analysis tools provides insights from basic sequence statistics to |
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advanced protein prediction</p> |
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</div> |
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<div class="features-grid"> |
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<div class="feature-card" data-aos="fade-up"> |
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<div class="feature-icon"> |
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<i class="fas fa-microscope"></i> |
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</div> |
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<h3>Sequence Analysis</h3> |
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<p>Get detailed statistics about your DNA sequence, including length, GC content, and nucleotide |
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composition with intuitive visualizations.</p> |
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<a href="#sequence-analysis" class="feature-link">Learn more <i |
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class="fas fa-arrow-right"></i></a> |
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</div> |
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<div class="feature-card" data-aos="fade-up" data-aos-delay="100"> |
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<div class="feature-icon"> |
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<i class="fas fa-dna"></i> |
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</div> |
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<h3>Codon Detection</h3> |
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<p>Identify start and stop codons across your sequence to locate potential protein-coding |
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regions with high precision.</p> |
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<a href="#codon-detection" class="feature-link">Learn more <i |
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class="fas fa-arrow-right"></i></a> |
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</div> |
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<div class="feature-card" data-aos="fade-up" data-aos-delay="200"> |
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<div class="feature-icon"> |
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<i class="fas fa-project-diagram"></i> |
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</div> |
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<h3>Reading Frames</h3> |
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<p>Analyze all six reading frames to identify potential protein-coding regions and open reading |
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frames (ORFs).</p> |
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<a href="#reading-frames" class="feature-link">Learn more <i class="fas fa-arrow-right"></i></a> |
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</div> |
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<div class="feature-card" data-aos="fade-up"> |
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<div class="feature-icon"> |
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<i class="fas fa-chart-bar"></i> |
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</div> |
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<h3>Coverage Analysis</h3> |
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<p>Identify high-coverage (GC-rich) regions, often associated with gene-dense areas and promoter |
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regions.</p> |
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<a href="#coverage-analysis" class="feature-link">Learn more <i |
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class="fas fa-arrow-right"></i></a> |
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</div> |
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<div class="feature-card" data-aos="fade-up" data-aos-delay="100"> |
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<div class="feature-icon"> |
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<i class="fas fa-prescription"></i> |
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</div> |
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<h3>Protein Prediction</h3> |
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<p>Predict potential proteins from your DNA sequence and analyze their amino acid composition. |
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</p> |
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<a href="#protein-prediction" class="feature-link">Learn more <i |
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class="fas fa-arrow-right"></i></a> |
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</div> |
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<div class="feature-card" data-aos="fade-up" data-aos-delay="200"> |
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<div class="feature-icon"> |
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<i class="fas fa-server"></i> |
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</div> |
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<h3>Local Server</h3> |
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<p>Deploy DNAnalyzer as a local server for secure, high-throughput analysis of sensitive genomic |
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data.</p> |
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<a href="#local-server" class="feature-link">Learn more <i class="fas fa-arrow-right"></i></a> |
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</div> |
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</div> |
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</div> |
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</section> |
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<section id="sequence-analysis" class="section section-detailed feature-section-odd"> |
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<div class="container"> |
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<div class="feature-detailed"> |
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<div class="feature-image" data-aos="fade-right"> |
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<div class="feature-image-wrapper"> |
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<img src="../assets/screenshots/sequence-analysis.png" alt="Sequence Analysis" |
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onerror="this.src='../assets/icons/Icon_Dark_BG.svg'"> |
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</div> |
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</div> |
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<div class="feature-content" data-aos="fade-left"> |
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<h2>Sequence Analysis</h2> |
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<p>Our basic sequence analysis tools give you immediate insights into your DNA sequence |
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properties.</p> |
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<ul class="feature-list"> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Base Composition</h4> |
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<p>Interactive visualization of nucleotide distribution with precise percentages</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>GC Content Calculation</h4> |
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<p>Identify regions with high GC content, important for gene density and stability |
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</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Sequence Length Analysis</h4> |
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<p>Get exact measurements of your DNA sequence with support for very large genomes |
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</p> |
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</div> |
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</li> |
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</ul> |
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<a href="../analyzer/analyzer.html" class="btn btn-primary">Try Sequence Analysis</a> |
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</div> |
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</div> |
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</div> |
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</section> |
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<section id="codon-detection" class="section section-detailed feature-section-even"> |
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<div class="container"> |
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<div class="feature-detailed reverse"> |
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<div class="feature-image" data-aos="fade-left"> |
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<div class="feature-image-wrapper"> |
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<img src="../assets/screenshots/codon-detection.png" alt="Codon Detection" |
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onerror="this.src='../assets/icons/Icon_Dark_BG.svg'"> |
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</div> |
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</div> |
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<div class="feature-content" data-aos="fade-right"> |
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<h2>Codon Detection</h2> |
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<p>Identify critical codon patterns in your DNA sequence with our advanced detection algorithms. |
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</p> |
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<ul class="feature-list"> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Start Codon Identification</h4> |
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<p>Automatically detect ATG start codons that initiate protein translation</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Stop Codon Recognition</h4> |
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<p>Find all TAA, TAG, and TGA stop codons that terminate protein synthesis</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Codon Frequency Analysis</h4> |
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<p>Analyze codon usage patterns across your sequence to identify potential gene |
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regions</p> |
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</div> |
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</li> |
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</ul> |
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<a href="../analyzer/analyzer.html" class="btn btn-primary">Try Codon Detection</a> |
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</div> |
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</div> |
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</div> |
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</section> |
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<section id="reading-frames" class="section section-detailed feature-section-odd"> |
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<div class="container"> |
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<div class="feature-detailed"> |
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<div class="feature-image" data-aos="fade-right"> |
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<div class="feature-image-wrapper"> |
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<img src="../assets/screenshots/reading-frames.png" alt="Reading Frames" |
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onerror="this.src='../assets/icons/Icon_Dark_BG.svg'"> |
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</div> |
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</div> |
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<div class="feature-content" data-aos="fade-left"> |
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<h2>Reading Frames Analysis</h2> |
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<p>Comprehensive analysis of all six reading frames to identify potential genes and coding |
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regions.</p> |
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<ul class="feature-list"> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Six-Frame Translation</h4> |
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<p>Analyze three forward and three reverse reading frames simultaneously</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Open Reading Frame (ORF) Detection</h4> |
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<p>Identify complete ORFs from start to stop codons across all frames</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Gene Prediction</h4> |
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<p>Find potential genes based on ORF length and composition characteristics</p> |
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</div> |
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</li> |
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</ul> |
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<a href="../analyzer/analyzer.html" class="btn btn-primary">Try Reading Frames Analysis</a> |
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</div> |
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</div> |
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</div> |
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</section> |
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<section id="coverage-analysis" class="section section-detailed feature-section-even"> |
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<div class="container"> |
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<div class="feature-detailed reverse"> |
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<div class="feature-image" data-aos="fade-left"> |
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<div class="feature-image-wrapper"> |
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<img src="../assets/screenshots/coverage-analysis.png" alt="Coverage Analysis" |
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onerror="this.src='../assets/icons/Icon_Dark_BG.svg'"> |
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</div> |
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</div> |
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<div class="feature-content" data-aos="fade-right"> |
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<h2>Coverage Analysis</h2> |
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<p>Identify regions of interest with our powerful coverage analysis tools to spot regulatory |
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elements and gene-dense areas.</p> |
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<ul class="feature-list"> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>GC-Rich Region Detection</h4> |
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<p>Find CpG islands and GC-rich regions often associated with gene promoters</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Promoter Element Identification</h4> |
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<p>Detect TATA boxes, BRE, INR, and DPE motifs that indicate promoter regions</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Visualization Tools</h4> |
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<p>Graphical representation of coverage across your sequence for easy interpretation |
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</p> |
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</div> |
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</li> |
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</ul> |
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<a href="../analyzer/analyzer.html" class="btn btn-primary">Try Coverage Analysis</a> |
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</div> |
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</div> |
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</div> |
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</section> |
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<section id="protein-prediction" class="section section-detailed feature-section-odd"> |
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<div class="container"> |
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<div class="feature-detailed"> |
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<div class="feature-image" data-aos="fade-right"> |
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<div class="feature-image-wrapper"> |
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<img src="../assets/screenshots/protein-prediction.png" alt="Protein Prediction" |
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onerror="this.src='../assets/icons/Icon_Dark_BG.svg'"> |
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</div> |
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</div> |
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<div class="feature-content" data-aos="fade-left"> |
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<h2>Protein Prediction</h2> |
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<p>Translate DNA sequences into proteins and analyze their properties with our advanced |
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prediction tools.</p> |
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<ul class="feature-list"> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>ORF Translation</h4> |
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<p>Convert open reading frames to amino acid sequences using the standard genetic |
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code</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Protein Length Filtering</h4> |
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<p>Focus on proteins of significant length to identify functional gene products</p> |
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</div> |
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</li> |
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<li> |
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<i class="fas fa-check-circle"></i> |
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<div> |
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<h4>Amino Acid Composition</h4> |
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<p>Analyze the distribution of amino acids within predicted proteins</p> |
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</div> |
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</li> |
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</ul> |
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<a href="../analyzer/analyzer.html" class="btn btn-primary">Try Protein Prediction</a> |
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</div> |
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</div> |
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</div> |
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</section> |
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389 |
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<section id="local-server" class="section section-detailed feature-section-even"> |
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<div class="container"> |
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<div class="feature-detailed reverse"> |
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<div class="feature-image" data-aos="fade-left"> |
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<div class="feature-image-wrapper"> |
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<img src="../assets/screenshots/local-server.png" alt="Local Server" |
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onerror="this.src='../assets/icons/Icon_Dark_BG.svg'"> |
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</div> |
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</div> |
|
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<div class="feature-content" data-aos="fade-right"> |
|
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<h2>Local Server Deployment</h2> |
|
|
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<p>Run DNAnalyzer as a local server for secure, high-throughput analysis of sensitive genomic |
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|
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data.</p> |
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|
403 |
|
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|
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<ul class="feature-list"> |
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<li> |
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|
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<i class="fas fa-check-circle"></i> |
|
|
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<div> |
|
|
408 |
<h4>Privacy-Focused Analysis</h4> |
|
|
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<p>Keep sensitive genetic data on your own infrastructure with no external data |
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|
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transfer</p> |
|
|
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</div> |
|
|
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</li> |
|
|
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<li> |
|
|
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<i class="fas fa-check-circle"></i> |
|
|
415 |
<div> |
|
|
416 |
<h4>High-Performance Processing</h4> |
|
|
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<p>Optimized for multi-core systems to handle large datasets and batch processing |
|
|
418 |
</p> |
|
|
419 |
</div> |
|
|
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</li> |
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|
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<li> |
|
|
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<i class="fas fa-check-circle"></i> |
|
|
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<div> |
|
|
424 |
<h4>API Integration</h4> |
|
|
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<p>RESTful API for seamless integration with your existing bioinformatics pipelines |
|
|
426 |
</p> |
|
|
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</div> |
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</li> |
|
|
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</ul> |
|
|
430 |
|
|
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<a href="../server/server.html" class="btn btn-primary">Learn About Server Setup</a> |
|
|
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</div> |
|
|
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</div> |
|
|
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</div> |
|
|
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</section> |
|
|
436 |
|
|
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<section class="section comparison-section"> |
|
|
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<div class="container"> |
|
|
439 |
<div class="section-title"> |
|
|
440 |
<h2>Why Choose DNAnalyzer?</h2> |
|
|
441 |
<p>See how DNAnalyzer compares to traditional DNA analysis tools</p> |
|
|
442 |
</div> |
|
|
443 |
|
|
|
444 |
<div class="comparison-table-container" data-aos="fade-up"> |
|
|
445 |
<table class="comparison-table"> |
|
|
446 |
<thead> |
|
|
447 |
<tr> |
|
|
448 |
<th>Feature</th> |
|
|
449 |
<th>DNAnalyzer</th> |
|
|
450 |
<th>Traditional Tools</th> |
|
|
451 |
</tr> |
|
|
452 |
</thead> |
|
|
453 |
<tbody> |
|
|
454 |
<tr> |
|
|
455 |
<td>User Interface</td> |
|
|
456 |
<td><i class="fas fa-check-circle check-icon"></i> Modern web interface</td> |
|
|
457 |
<td><i class="fas fa-times-circle x-icon"></i> Often command-line only</td> |
|
|
458 |
</tr> |
|
|
459 |
<tr> |
|
|
460 |
<td>Privacy</td> |
|
|
461 |
<td><i class="fas fa-check-circle check-icon"></i> On-device processing</td> |
|
|
462 |
<td><i class="fas fa-times-circle x-icon"></i> May require server upload</td> |
|
|
463 |
</tr> |
|
|
464 |
<tr> |
|
|
465 |
<td>Machine Learning</td> |
|
|
466 |
<td><i class="fas fa-check-circle check-icon"></i> Advanced ML algorithms</td> |
|
|
467 |
<td><i class="fas fa-times-circle x-icon"></i> Often rule-based only</td> |
|
|
468 |
</tr> |
|
|
469 |
<tr> |
|
|
470 |
<td>Setup Complexity</td> |
|
|
471 |
<td><i class="fas fa-check-circle check-icon"></i> Simple, instant setup</td> |
|
|
472 |
<td><i class="fas fa-times-circle x-icon"></i> Complex dependencies</td> |
|
|
473 |
</tr> |
|
|
474 |
<tr> |
|
|
475 |
<td>Visualization</td> |
|
|
476 |
<td><i class="fas fa-check-circle check-icon"></i> Interactive graphics</td> |
|
|
477 |
<td><i class="fas fa-times-circle x-icon"></i> Often text-only output</td> |
|
|
478 |
</tr> |
|
|
479 |
<tr> |
|
|
480 |
<td>Multiple File Support</td> |
|
|
481 |
<td><i class="fas fa-check-circle check-icon"></i> FASTA, FASTQ, plain text</td> |
|
|
482 |
<td><i class="fas fa-check-circle check-icon"></i> Various formats</td> |
|
|
483 |
</tr> |
|
|
484 |
<tr> |
|
|
485 |
<td>Cost</td> |
|
|
486 |
<td><i class="fas fa-check-circle check-icon"></i> Free, open-source</td> |
|
|
487 |
<td><i class="fas fa-minus-circle minus-icon"></i> Often commercial</td> |
|
|
488 |
</tr> |
|
|
489 |
</tbody> |
|
|
490 |
</table> |
|
|
491 |
</div> |
|
|
492 |
</div> |
|
|
493 |
</section> |
|
|
494 |
|
|
|
495 |
<section class="section testimonials-section"> |
|
|
496 |
<div class="container"> |
|
|
497 |
<div class="section-title"> |
|
|
498 |
<h2>What Our Users Say</h2> |
|
|
499 |
<p>Hear from researchers and educators who use DNAnalyzer</p> |
|
|
500 |
</div> |
|
|
501 |
|
|
|
502 |
<div class="testimonials-grid"> |
|
|
503 |
<div class="testimonial-card" data-aos="fade-up"> |
|
|
504 |
<div class="testimonial-content"> |
|
|
505 |
<p>"DNAnalyzer has transformed how I teach genomics to undergraduates. The visual interface |
|
|
506 |
makes complex concepts accessible, and students can perform real analysis without a |
|
|
507 |
steep learning curve."</p> |
|
|
508 |
</div> |
|
|
509 |
<div class="testimonial-author"> |
|
|
510 |
<div class="author-info"> |
|
|
511 |
<h4>Dr. Sarah Chen</h4> |
|
|
512 |
<p>Associate Professor, Molecular Biology</p> |
|
|
513 |
</div> |
|
|
514 |
</div> |
|
|
515 |
</div> |
|
|
516 |
|
|
|
517 |
<div class="testimonial-card" data-aos="fade-up" data-aos-delay="100"> |
|
|
518 |
<div class="testimonial-content"> |
|
|
519 |
<p>"As a researcher focusing on genetic disorders, I appreciate DNAnalyzer's privacy-first |
|
|
520 |
approach. The local server option allows me to analyze sensitive patient data without |
|
|
521 |
exposing it to third parties."</p> |
|
|
522 |
</div> |
|
|
523 |
<div class="testimonial-author"> |
|
|
524 |
<div class="author-info"> |
|
|
525 |
<h4>Dr. Michael Rodriguez</h4> |
|
|
526 |
<p>Genetic Researcher</p> |
|
|
527 |
</div> |
|
|
528 |
</div> |
|
|
529 |
</div> |
|
|
530 |
|
|
|
531 |
<div class="testimonial-card" data-aos="fade-up" data-aos-delay="200"> |
|
|
532 |
<div class="testimonial-content"> |
|
|
533 |
<p>"The ability to quickly identify promoter regions and protein-coding sequences has |
|
|
534 |
accelerated my synthetic biology project significantly. DNAnalyzer is now a core part of |
|
|
535 |
our design verification process."</p> |
|
|
536 |
</div> |
|
|
537 |
<div class="testimonial-author"> |
|
|
538 |
<div class="author-info"> |
|
|
539 |
<h4>Emily Takahashi</h4> |
|
|
540 |
<p>Synthetic Biology Engineer</p> |
|
|
541 |
</div> |
|
|
542 |
</div> |
|
|
543 |
</div> |
|
|
544 |
</div> |
|
|
545 |
</div> |
|
|
546 |
</section> |
|
|
547 |
|
|
|
548 |
<section class="section cta-section"> |
|
|
549 |
<div class="container text-center"> |
|
|
550 |
<h2>Ready to start analyzing DNA sequences?</h2> |
|
|
551 |
<p>Experience the power of DNAnalyzer's features today</p> |
|
|
552 |
|
|
|
553 |
<div class="cta-buttons"> |
|
|
554 |
<a href="../analyzer/analyzer.html" class="btn btn-primary"> |
|
|
555 |
<i class="fas fa-dna btn-icon"></i> Try DNAnalyzer Now |
|
|
556 |
</a> |
|
|
557 |
<a href="../docs/docs.html" class="btn btn-secondary"> |
|
|
558 |
<i class="fas fa-book btn-icon"></i> Read Documentation |
|
|
559 |
</a> |
|
|
560 |
</div> |
|
|
561 |
</div> |
|
|
562 |
</section> |
|
|
563 |
</main> |
|
|
564 |
|
|
|
565 |
<!-- Footer --> |
|
|
566 |
<footer class="footer"> |
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567 |
<div class="container"> |
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568 |
<div class="footer-grid"> |
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|
569 |
<div class="footer-brand"> |
|
|
570 |
<img src="../assets/icons/Icon_Dark_BG.svg" alt="DNAnalyzer Logo"> |
|
|
571 |
<p>DNAnalyzer is a powerful, privacy-focused DNA analysis tool using cutting-edge machine learning |
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models for accurate, on-device genomic analysis.</p> |
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|
573 |
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574 |
<div class="footer-social"> |
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575 |
<a href="https://github.com/VerisimilitudeX/DNAnalyzer" class="social-link"> |
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<i class="fab fa-github"></i> |
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577 |
</a> |
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578 |
<a href="https://discord.gg/xNpujz49gj" class="social-link"> |
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579 |
<i class="fab fa-discord"></i> |
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580 |
</a> |
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581 |
<a href="https://www.twitter.com/DNAnalyzer_" class="social-link"> |
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582 |
<i class="fab fa-twitter"></i> |
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</a> |
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584 |
</div> |
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585 |
</div> |
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586 |
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587 |
<div class="footer-nav"> |
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588 |
<h4>Product</h4> |
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|
589 |
<ul> |
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590 |
<li><a href="features.html">Features</a></li> |
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|
591 |
<li><a href="../analyzer/analyzer.html">DNA Analyzer</a></li> |
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592 |
<li><a href="../server/server.html">Server</a></li> |
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593 |
<li><a href="../docs/docs.html">Documentation</a></li> |
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</div> |
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596 |
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597 |
<div class="footer-nav"> |
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598 |
<h4>Resources</h4> |
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599 |
<ul> |
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600 |
<li><a href="../docs/getting-started.md">Getting Started</a></li> |
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|
601 |
<li><a href="../docs/citations.md">Citations</a></li> |
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602 |
<li><a href="../docs/research/genes.md">Gene Research</a></li> |
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603 |
<li><a href="../docs/samples/cli-arguments-examples.md">CLI Examples</a></li> |
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</ul> |
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</div> |
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606 |
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<div class="footer-nav"> |
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608 |
<h4>Community</h4> |
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609 |
<ul> |
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610 |
<li><a href="https://github.com/VerisimilitudeX/DNAnalyzer">GitHub</a></li> |
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|
611 |
<li><a href="https://discord.gg/xNpujz49gj">Discord</a></li> |
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612 |
<li><a href="../docs/contributing/CONTRIBUTING.md">Contributing</a></li> |
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613 |
<li><a href="../CODE_OF_CONDUCT.md">Code of Conduct</a></li> |
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</ul> |
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<div class="footer-bottom"> |
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619 |
<div class="footer-copyright"> |
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Copyright © Piyush Acharya 2025. DNAnalyzer is a fiscally sponsored 501(c)(3) nonprofit (EIN: |
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81-2908499). MIT License. |
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623 |
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<div class="footer-links"> |
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<a href="../LICENSE.md">License</a> |
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626 |
<a href="../SECURITY.md">Security</a> |
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<a href="../CITATION.cff">Citation</a> |
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