--- a +++ b/docs/citations.md @@ -0,0 +1,60 @@ +# Citations + +## Contributors + +<h4>DNAnalyzer was developed with the help of the following people: +<h4> +<a href="https://github.com/VerisimilitudeX/DNAnalyzer/graphs/contributors"> + +<img src="https://contrib.rocks/image?repo=VerisimilitudeX/DNAnalyzer&&max=817" alt=""/> + +<h2 align="left" id="citations">Citations +</h2> + +<ol> + <li>Genomic Data Science Fact Sheet. (n.d.). Genome.gov. + <a href="https://www.genome.gov/about-genomics/fact-sheets/Genomic-Data-Science">https://www.genome.gov/about-genomics/fact-sheets/Genomic-Data-Science + </a> + </li> + <li>DNA and RNA codon tables. (2020, December 13). Wikipedia. + <a href="https://en.wikipedia.org/wiki/DNA_and_RNA_codon_tables">https://en.wikipedia.org/wiki/DNA_and_RNA_codon_tables + </a> + </li> + <li>GC-content - an overview | ScienceDirect Topics. (n.d.). Www.sciencedirect.com. + <a href="https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/gc-content">https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/gc-content + </a> + </li> + <li>Length matters: Disease implications for long genes. (2013, October 22). Spectrum | Autism Research News. + <a href="https://www.spectrumnews.org/opinion/viewpoint/length-matters-disease-implications-for-long-genes/">https://www.spectrumnews.org/opinion/viewpoint/length-matters-disease-implications-for-long-genes/ + </a> + </li> + <li>Suter, D. M. (2020). Transcription Factors and DNA Play Hide and Seek. Trends in Cell Biology. + <a href="https://pubmed.ncbi.nlm.nih.gov/32413318/">https://pubmed.ncbi.nlm.nih.gov/32413318/ + </a> + </li> + <li>What is non-coding DNA?: MedlinePlus Genetics. (n.d.). Medlineplus.gov. + <a href="https://medlineplus.gov/genetics/understanding/basics/noncodingdna/">https://medlineplus.gov/genetics/understanding/basics/noncodingdna/ + </a> + </li> + <li>BLAST TOPICS. (2019). Nih.gov. + <a href="https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=BlastHelp">https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=BlastHelp + </a> + </li> + <li>Wikipedia Contributors. (2021, March 24). Needleman–Wunsch algorithm. Wikipedia; Wikimedia Foundation. + <a href="https://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm">https://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm + </a> + </li> + <li>Cytogenic Location. (2020, December 13). Wikipedia. + <a href="https://en.wikipedia.org/wiki/Cytogenetics">https://en.wikipedia.org/wiki/Cytogenetics + </a> + </li> +</ol> + +## Further Citations + +1. “CpG Island - an Overview | ScienceDirect Topics.” Sciencedirect.com, 2015, www.sciencedirect.com/topics/neuroscience/cpg-island. +2. Alberts, Bruce. Molecular Biology of the Cell. 6th ed., New York, Ny U.A., Garland Science Taylor & Francis, 2008. +3. Haberle, Vanja, and Alexander Stark. “Eukaryotic Core Promoters and the Functional Basis of Transcription Initiation.” Nature Reviews Molecular Cell Biology, vol. 19, no. 10, 1 Oct. 2018, pp. 621–637, www.nature.com/articles/s41580-018-0028-8, 10.1038/s41580-018-0028-8. +4. Doane, Ashley S., and Olivier Elemento. “Regulatory Elements in Molecular Networks.” Wiley Interdisciplinary Reviews: Systems Biology and Medicine, vol. 9, no. 3, 17 Jan. 2017, p. e1374, 10.1002/wsbm.1374. +5. Bell, Scott, et al. “Mutations in ACTL6B Cause Neurodevelopmental Deficits and Epilepsy and Lead to Loss of Dendrites in Human Neurons.” The American Journal of Human Genetics, vol. 104, no. 5, 2 May 2019, pp. 815–834, www.cell.com/ajhg/fulltext/S0002-9297(19)30118-1, 10.1016/j.ajhg.2019.03.022. +6. Soheili‐Nezhad, Sourena, et al. “Long Genes Are More Frequently Affected by Somatic Mutations and Show Reduced Expression in Alzheimer’s Disease: Implications for Disease Etiology.” Alzheimer’s & Dementia, vol. 17, no. 3, 19 Oct. 2020, pp. 489–499, 10.1002/alz.12211.