
...
from itkwidgets import view

view(geometries=[femur.mesh])
```



After creating the above mesh, creating cartilage subregions & an anatomical coordinate
system is as simple as: 

```python
# Load in full seg image
...
IS_arrow = get_arrow(femur_acs.is_axis, origin=femur_acs.origin)
ML_arrow = get_arrow(femur_acs.ml_axis, origin=femur_acs.origin)

view(geometries=[femur.mesh, AP_arrow, IS_arrow, ML_arrow])
```










# Development / Contributing
General information for contributing can be found [here](https://github.com/gattia/pymskt/blob/main/CONTRIBUTING.md)


	a/README.md		b/README.md
	...		...
106	from itkwidgets import view	106	from itkwidgets import view
107		107
108	view(geometries=[femur.mesh])	108	view(geometries=[femur.mesh])
109	```	109	```
110		110
111	![](/images/femur_itkwidgets.png)
112
113	After creating the above mesh, creating cartilage subregions & an anatomical coordinate	111	After creating the above mesh, creating cartilage subregions & an anatomical coordinate
114	system is as simple as:	112	system is as simple as:
115		113
116	```python	114	```python
117	# Load in full seg image	115	# Load in full seg image
	...		...
136	IS_arrow = get_arrow(femur_acs.is_axis, origin=femur_acs.origin)	134	IS_arrow = get_arrow(femur_acs.is_axis, origin=femur_acs.origin)
137	ML_arrow = get_arrow(femur_acs.ml_axis, origin=femur_acs.origin)	135	ML_arrow = get_arrow(femur_acs.ml_axis, origin=femur_acs.origin)
138		136
139	view(geometries=[femur.mesh, AP_arrow, IS_arrow, ML_arrow])	137	view(geometries=[femur.mesh, AP_arrow, IS_arrow, ML_arrow])
140	```	138	```
141	\|Anatomical Coordinate System - Cartilage Thickness \| Anatomical Coordinate System - Cartilage Subregions \|
142	\|:---: \|:---: \|
143	\|![](/images/femur_acs.png) \| ![](/images/femur_subregions.png) \|
144
145
146	An example of how the cartilage thickness values are computed:
147
148	![](/images/cartilage_thickness_analysis.png)
149		139
150		140
151	# Development / Contributing	141	# Development / Contributing
152	General information for contributing can be found [here](https://github.com/gattia/pymskt/blob/main/CONTRIBUTING.md)	142	General information for contributing can be found [here](https://github.com/gattia/pymskt/blob/main/CONTRIBUTING.md)
153		143