// ****************************

// GENERAL DESCRIPTION OF MODEL

// ****************************

// This model uses motion capture C3D files to apply a motion th Full Body, or only to the Lower Extremities and trunk.

// The model requires to run in two sequences and  can be switched in and out by switches in the top of the main 

// file. The sequence  "MotionAndParameterOptimizationModel" is used for optimizing the motion and identifying model 

// parameters such as segment lengths and local marker positions. The output from this analysis is  a set of parameters

// and joints angles which is automatically saved. This model has no muscles. 

// The second sequence is the inverse dynamics study which is driven by the optimized motion from 

// the first study, this "InverseDynamicModel" model includes muscles.

// Using the FullBody slows down the model and computational time increases a lot. It is thereofre recommended to 

// use the LowerExtremity model if you are interested mostly in the leg.

// ****************************

// How to run the model

// ****************************

// 1. Run the MotionAndParameterOptimization sequence  first.

// 2. Switch to the Inverse Dynamcis Sequence

// 3. Reload the model (Press F7)

// 4. Run the InverseDynamicAnalysis Sequence

//***************************************************************************************************

//If you intend to run your own set of C3D files, pleae have a look at the wiki on www.anyscript.org!

//***************************************************************************************************

// **************************************************

//DESCRIPTIONS OF THE INDIVIDUAL STUDIES IN THE MODEL

// **************************************************

//KinematicStudyForParameterIdentification: 

//    This study is the basis study for the Parameter identification study

//

//ParameterIdentification:

//    Running this study will optimize the parameters of the model: segments length and marker positions

//    It will also calculate the motion but usually this optimization is done with a lower amount of 

//    timesteps so the produced motion is not usefull for an inverse dynamic analysis. The reduced 

//    number of timesteps will speed the optimization it should however not be too low, this will

//    reduce the accuracy

//    

//MotionOptimization:

//    This study will run the kinematic analysis using the optimize parameters from the ParameterIdentification study 

//    This study will run with a high number of timesteps. It will automatically save the optimized motion in files 

//    named according to name of the used C3D which is specified in the ModelSetup.any file

//

//LoadParametersOptimizationResults 

//    This study is used ONLY for loading the optimized results from the ParameterIdentification study

//

//InverseDynamicStudy:

//    This study run the inverse dynamic analysis of the model with the optimized motion and optimized parameters

//

//

//The studies has to to be activated in a certain sequence, to make this easier there are the following

//operation sequences:

//

//MotionAndParameterOptimiztionSequence: 

//    This seqeunce is used for determining the model parameters such as segment lenghts, marker positions

//    

//

//InverseDynamicAnalysisSequence:

//    This study sequence is used for calibrating the model and running the inverse dynamic analysis