<?xml version="1.0" encoding="utf-8"?>
<executable>
  <category>Quantification.Musculoskeletal</category>
  <index>0</index>
  <title>Intervertebral Analysis</title>
  <description><![CDATA[Perform Musculoskeletal Intervertebral Analysis on an image]]></description>
  <version>0.1.0.</version>
  <documentation-url>https://github.com/username/project</documentation-url>
  <license/>
  <contributor>Joseph Szatkowski (Washington University in St. Louis)</contributor>
  <acknowledgements>
    <![CDATA[Developed by the Washington University in St. Louis Musculoskeletal Reseach Center with the assistance of Michael Brodt, Anish Jagannathan, Matthew Silva, and Simon Tang.\n
        This file was partially funded by NIH grant P30 AR074992.]]>
  </acknowledgements>
  <parameters>
    <image>
      <name>image</name>
      <label>Image</label>
      <channel>input</channel>
      <index>0</index>
      <description><![CDATA[The image to be analyzed]]></description>
      <default>1.0</default>
    </image>
    <image type="label" reference ="image">
      <name>mask1</name>
      <label>Mask1</label>
      <channel>input</channel>
      <index>1</index>
      <description><![CDATA[Mask covering the entire intervertebral disc or the nucleus pulposus (determined based on relative size)]]></description>
    </image>
    <image type="label" reference ="image">
      <name>mask2</name>
      <label>Mask2</label>
      <channel>input</channel>
      <index>2</index>
      <description><![CDATA[Mask covering the entire intervertebral disc or the nucleus pulposus (determined based on relative size)]]></description>
    </image>
    <float>
      <name>voxelSize</name>
      <label>Voxel Size</label>
      <channel>input</channel>
      <index>3</index>
      <description><![CDATA[The length of 1 voxel side in mm]]></description>
    </float>
    <string>
      <name>inputName</name>
      <label>Input Name</label>
      <channel>input</channel>
      <index>4</index>
      <description><![CDATA[The name of the input image]]></description>
    </string>
    <string>
      <name>output</name>
      <label>Output Directory</label>
      <channel>input</channel>
      <index>5</index>
      <description><![CDATA[The directory to output data files to]]></description>
    </string>
  </parameters>
</executable>