#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Thu Mar 25 15:51:17 2021
@author: emi
"""
# ------------------------------------------------------------------------ #
# Copyright (c) 2019 Modenese L., Ceseracciu, E., Reggiani M., Lloyd, D.G. #
# #
# Licensed under the Apache License, Version 2.0 (the "License"); #
# you may not use this file except in compliance with the License. #
# You may obtain a copy of the License at #
# http://www.apache.org/licenses/LICENSE-2.0. #
# #
# Unless required by applicable law or agreed to in writing, software #
# distributed under the License is distributed on an "AS IS" BASIS, #
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or #
# implied. See the License for the specific language governing #
# permissions and limitations under the License. #
# #
# Author: Luca Modenese, January 2015 #
# email: l.modenese@imperial.ac.uk #
# ------------------------------------------------------------------------ #
# Written by Emiliano Ravera emiliano.ravera@uner.edu.ar as part of the
# Python version of work by Luca Modenese in the parameterisation of muscle
# tendon properties.
#------ import packages ---------
from pathlib import Path
# adding OpenSim to python script
import sys
sys.path.append('/opt/opensim-core/lib/python3.6/site-packages/')
import opensim
# # adding tool function to python script
# from Public_functions import getModelJointDefinitions, \
# getChildBodyJoint, \
# getParentBodyJoint, \
# getMuscleAttachBody
# from Private_functions import getJointsSpannedByMuscle, \
# getIndipCoordAndJoint, \
# sampleMuscleQuantities
from optimMuscleParams import optimMuscleParams
#--------------------------------
# ========= USERS SETTINGS =======
actualpath = Path().resolve()
# p = actualpath.parent
path_opensim_files = str(actualpath.parent) + '/Example_case'
# REFERENCE MODEL
# Muscle dynamics from Arnold model will be mapped onto the target model.
osimModel_ref_filepath = path_opensim_files + '/Input_Models/Reference_Arnold_R.osim'
# TARGET MODEL
# Target model is a model built from scratch using dataveric data.
osimModel_targ_filepath = path_opensim_files + '/Input_Models/Target_LHDL_Schutte_R.osim'
# nr of evaluations per coordinate
N_eval = 10
# ================================
# Folder where to store the optimized model and a log
# checking if folder exists. If not, create it.
optimizedModel_folder = Path(path_opensim_files + '/Optimized_Models')
optimizedModel_folder.mkdir(parents=True, exist_ok=True)
# initializing folders and log file
log_folder = str(optimizedModel_folder)
# optimizing target based on reference model for N_eval points per coord.
osimModel_opt, SimsInfo = optimMuscleParams(osimModel_ref_filepath, osimModel_targ_filepath, N_eval, log_folder);
# printing the optimized model
osimModel_opt.printToXML(str(optimizedModel_folder) + '/' + osimModel_opt.getName())
Datasets
Models
