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Joel Williams
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MuscleForceDirection
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[717926]: / MATLAB / TEST_plugin.m

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%-------------------------------------------------------------------------%

% Copyright (c) 2019 Modenese L.                                          %

%    Author:   Luca Modenese                                              %

%    email:    l.modenese@imperial.ac.uk                                  % 

% ----------------------------------------------------------------------- %



%% TEST1: use model built on purpose to test 



% Load Library

import org.opensim.modeling.*;



% verification

osimModel_name = '../tests/MFD_tests/testModel.osim'; 

IK_mot_file = '../tests/MFD_tests/testKinematics_file.mot';

MFD_sto_file = './test_results/test1.sto';

bodyOfInterest_name = 'MovingBody';

bodyExpressResultsIn_name = 'ground';

effec_att = 'false';

test_input = [];

vis_on = 'false';



validated_results_folder = '../_test_data/MFD_tests/validated_res';



res_anatAttach_local = getMuscleForceDirection(osimModel_name,...

    IK_mot_file,...

    MFD_sto_file,...

    bodyOfInterest_name,...

    bodyExpressResultsIn_name,...

    effec_att,...

    vis_on,...

    []);



% res_effectAttach_local = getMuscleForceDirection(osimModel_name,...

%     IK_mot_file,...

%     bodyOfInterest_name,...

%     bodyExpressResultsIn_name,...

%     'true',...

%     vis_on,...

%     []);

% 

% res_effectAttach_ground = getMuscleForceDirection(osimModel_name,...

%     IK_mot_file,...

%     bodyOfInterest_name,...

%     'ground',...

%     'true',...

%     vis_on,...

%     []);

% 

% res_anatAttach_ground = getMuscleForceDirection(osimModel_name,...

%     IK_mot_file,...

%     bodyOfInterest_name,...

%     'ground',...

%     'false',...

%     vis_on,...

%     []);





% res_anatAttach_local

% res_anatAttach_ground

% res_effectAttach_ground

% res_effectAttach_local

% 

% res_anatAttach_local_val = sto2Mat(fullfile(validated_results_folder,'LOCAL_ANATOM_MuscleForceDirection_vectors.sto'));

% 

% res_anatAttach_ground.rowheaders

% res_effectAttach_ground

% res_effectAttach_local

%--------------------------------------------------------------------------

%% TEST3: simple arm26 model

osimModel_name = '../test_data/Arm26/arm26.osim';

IK_mot_file = '../test_data/Arm26/elbow_flexion.mot';

bodyOfInterest_name = 'r_humerus';

bodyExpressResultsIn_name = 'ground';

effective_attachm = 'false';

test_input = [];

% 

% 

% N_frame_test = 5;

muscleLinesOfActionStruct = getMuscleForceDirection(osimModel_name,...

                                                                IK_mot_file,...

                                                                bodyOfInterest_name,...

                                                                bodyExpressResultsIn_name,...

                                                                effective_attachm,...

                                                                'true',...

                                                                []);

                                    

%% TEST3: gait2392 model                                       

                                                            

osimModel_name              = '../tests/gait2392/subject01.osim';

IK_mot_file                 = '../tests/gait2392/subject01_walk1_ik.mot';

bodyOfInterest_name         = 'femur_r';

bodyExpressResultsIn_name   = [];

effective_attachm           = 'true';

test_input = [];

N_frame_test = 5;

muscleLinesOfActionStruct = getMuscleForceDirection(osimModel_name,...

                                                                IK_mot_file,...

                                                                bodyOfInterest_name,...

                                                                bodyExpressResultsIn_name,...

                                                                effective_attachm,...

                                                                'true',...

                                                                 []);