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accesskey="I">index</a></li> |
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accesskey="N">next</a> |</li> |
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<div class="section" id="wsitools-documentation"> |
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<h1>WSITools documentation!<a class="headerlink" href="#wsitools-documentation" title="Permalink to this headline">¶</a></h1> |
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<p>Tools to aid Digital pathology deep learning projects</p> |
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<ul class="simple"> |
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<li><p>Free software: MIT license</p></li> |
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<li><p>Documentation: <a class="reference external" href="https://wsitools.readthedocs.io/en/latest/index.html">https://wsitools.readthedocs.io/en/latest/index.html</a></p></li> |
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</ul> |
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<div class="section" id="features"> |
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<h2>Features<a class="headerlink" href="#features" title="Permalink to this headline">¶</a></h2> |
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<p>WSITools is a whole slide image processing toolkit. It provides efficient ways to extract patches from whole slide |
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images, and some other useful features for pathological image processing. |
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Currently, it supports four patch extraction scenarios: |
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.. 1. Extract patches from WSIs |
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.. 2. Extract patches from WSIs and their label (i.e. their directory name) |
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.. 1. TODO: Incomplete |
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.. 3. Extract patches from a fixed and a float WSI |
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.. 4. Extract patches from a fixed and a float WSI in places that intersect annotation objects |
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.. 1. TODO: Incomplete</p> |
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</div> |
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<div class="section" id="additional-features"> |
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<h2>Additional Features<a class="headerlink" href="#additional-features" title="Permalink to this headline">¶</a></h2> |
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<p>Contents:</p> |
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<ul> |
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<li class="toctree-l1"><a class="reference internal" href="getting-started.html">Getting started</a><ul> |
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<li class="toctree-l2"><a class="reference internal" href="getting-started.html#quick-start">Quick Start</a></li> |
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</ul> |
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</li> |
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<li class="toctree-l1"><a class="reference internal" href="example-commands.html">Example Commands</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="Tissue-Detection.html">Tissue Detection</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="Patch-Extraction.html">Patch Extraction</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="Patch-Extraction-with-Registration.html">Patch Extraction with Image Registration</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="Patch-Extraction-with-Annotation.html">Patch extraction with Annotations</a></li> |
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<li class="toctree-l1"><a class="reference internal" href="Patch-Extraction-with-Registration-and-Annotation.html">Patch Extraction with Registration & Annotations</a></li> |
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</ul> |
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</div> |
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</div> |
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</div> |
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<div class="section" id="indices-and-tables"> |
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<h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline">¶</a></h1> |
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<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li> |
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<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li> |
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<h3><a href="#">Table of Contents</a></h3> |
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<li><a class="reference internal" href="#">WSITools documentation!</a><ul> |
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<li><a class="reference internal" href="#features">Features</a></li> |
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<li><a class="reference internal" href="#additional-features">Additional Features</a></li> |
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<li><a class="reference internal" href="#indices-and-tables">Indices and tables</a></li> |
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