Datasets
Models
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ÇĽM îdocutils.nodesöîdocumentöôö)üö}ö(î rawsourceöî öîchildrenö]öh îsectionöôö)üö}ö(hhh]ö(h îtitleöôö)üö}ö(hîCommandsöh]öh îTextöôöîCommandsöůöüö}ö(hhîparentöhhhîsourceöNîlineöNubaî attributesö}ö(îidsö]öîclassesö]öînamesö]öîdupnamesö]öîbackrefsö]öuîtagnameöhhh hhhîD/projects/shart/digital_pathology/scripts/wsitools/docs/commands.rstöh Kubh î paragraphöôö)üö}ö(hîXThe Makefile contains the central entry points for common tasks related to this project.öh]öhîXThe Makefile contains the central entry points for common tasks related to this project.öůöüö}ö(hh/hh-hhhNh Nubah }ö(h ]öh!]öh#]öh%]öh']öuh)h+hh*h Khh hhubh )üö}ö(hhh]ö(h)üö}ö(hîSyncing data to S3öh]öhîSyncing data to S3öůöüö}ö(hh@hh>hhhNh Nubah }ö(h ]öh!]öh#]öh%]öh']öuh)hhh;hhhh*h Kubh î bullet_listöôö)üö}ö(hhh]ö(h î list_itemöôö)üö}ö(hîž`make sync_data_to_s3` will use `aws s3 sync` to recursively sync files in `data/` up to `s3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/`.öh]öh,)üö}ö(hhUh]ö(h îtitle_referenceöôö)üö}ö(hî`make sync_data_to_s3`öh]öhîmake sync_data_to_s3öůöüö}ö(hîmake sync_data_to_s3öhh\ubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhhWubhî will use öůöüö}ö(hî will use öhhWubh[)üö}ö(hî `aws s3 sync`öh]öhî aws s3 syncöůöüö}ö(hî aws s3 syncöhhpubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhhWubhî to recursively sync files in öůöüö}ö(hî to recursively sync files in öhhWubh[)üö}ö(hî`data/`öh]öhîdata/öůöüö}ö(hîdata/öhhäubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhhWubhî up to öůöüö}ö(hî up to öhhWubh[)üö}ö(hîM`s3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/`öh]öhîOs3://[OPTIONAL] your-bucket-for-syncing-data (do not include ÔÇśs3://ÔÇÖ)/data/öůöüö}ö(hîKs3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/öhhśubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhhWubhî.öůöüö}ö(hî.öhhWubeh }ö(h ]öh!]öh#]öh%]öh']öuh)h+hh*h K hhSubah }ö(h ]öh!]öh#]öh%]öh']öuh)hQhhNhhhh*h NubhR)üö}ö(hîĘ`make sync_data_from_s3` will use `aws s3 sync` to recursively sync files from `s3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/` to `data/`.öh]öh,)üö}ö(hh║h]ö(h[)üö}ö(hî`make sync_data_from_s3`öh]öhîmake sync_data_from_s3öůöüö}ö(hîmake sync_data_from_s3öhh┐ubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhh╝ubhî will use öůöüö}ö(hî will use öhh╝ubh[)üö}ö(hî `aws s3 sync`öh]öhî aws s3 syncöůöüö}ö(hî aws s3 syncöhhËubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhh╝ubhî to recursively sync files from öůöüö}ö(hî to recursively sync files from öhh╝ubh[)üö}ö(hîM`s3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/`öh]öhîOs3://[OPTIONAL] your-bucket-for-syncing-data (do not include ÔÇśs3://ÔÇÖ)/data/öůöüö}ö(hîKs3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/öhhšubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhh╝ubhî to öůöüö}ö(hî to öhh╝ubh[)üö}ö(hî`data/`öh]öhîdata/öůöüö}ö(hîdata/öhhűubah }ö(h ]öh!]öh#]öh%]öh']öuh)hZhh╝ubhî.öůöüö}ö(hhźhh╝ubeh }ö(h ]öh!]öh#]öh%]öh']öuh)h+hh*h K hhŞubah }ö(h ]öh!]öh#]öh%]öh']öuh)hQhhNhhhh*h Nubeh }ö(h ]öh!]öh#]öh%]öh']öîbulletöî*öuh)hLhh*h K hh;hhubeh }ö(h ]öîsyncing-data-to-s3öah!]öh#]öîsyncing data to s3öah%]öh']öuh)h hh hhhh*h Kubeh }ö(h ]öîcommandsöah!]öh#]öîcommandsöah%]öh']öuh)h hhhhhh*h Kubah }ö(h ]öh!]öh#]öh%]öh']öîsourceöh*uh)hîcurrent_sourceöNî current_lineöNîsettingsöîdocutils.frontendöîValuesöôö)üö}ö(hNî generatoröNî datestampöNî source_linköNî source_urlöNî toc_backlinksöîentryöîfootnote_backlinksöKî sectnum_xformöKîstrip_commentsöNîstrip_elements_with_classesöNî strip_classesöNî report_levelöKî halt_levelöKîexit_status_levelöKîdebugöNîwarning_streamöNî tracebacköłîinput_encodingöî utf-8-sigöî input_encoding_error_handleröîstrictöîoutput_encodingöîutf-8öî output_encoding_error_handleröjU îerror_encodingöîUTF-8öî error_encoding_error_handleröîbackslashreplaceöî language_codeöîenöîrecord_dependenciesöNîconfigöNî id_prefixöhîauto_id_prefixöîidöî dump_settingsöNîdump_internalsöNîdump_transformsöNîdump_pseudo_xmlöNîexpose_internalsöNîstrict_visitoröNî_disable_configöNî_sourceöh*î _destinationöNî _config_filesö]öîpep_referencesöNî pep_base_urlöî https://www.python.org/dev/peps/öîpep_file_url_templateöîpep-%04döîrfc_referencesöNî rfc_base_urlöî https://tools.ietf.org/html/öî tab_widthöKî trim_footnote_reference_spaceöëîfile_insertion_enabledöłî raw_enabledöKîsyntax_highlightöîlongöî smart_quotesöłîsmartquotes_localesö]öî character_level_inline_markupöëîdoctitle_xformöëî docinfo_xformöKîsectsubtitle_xformöëîembed_stylesheetöëîcloak_email_addressesöłîenvöNubîreporteröNîindirect_targetsö]öîsubstitution_defsö}öîsubstitution_namesö}öîrefnamesö}öîrefidsö}öînameidsö}ö(j/ j, j' j$ uî nametypesö}ö(j/ Nj' Nuh }ö(j, h j$ h;uî footnote_refsö}öî citation_refsö}öî autofootnotesö]öîautofootnote_refsö]öîsymbol_footnotesö]öîsymbol_footnote_refsö]öî footnotesö]öî citationsö]öîautofootnote_startöKîsymbol_footnote_startöK îid_startöKîparse_messagesö]öîtransform_messagesö]öî transformeröNî decorationöNhhub.