#!/usr/bin/env python

"""The setup script."""

from setuptools import find_packages, setup

with open("README.md") as readme_file:

    readme = readme_file.read()

with open("HISTORY.md") as history_file:

    history = history_file.read()

requirements = [

    "numpy",

    "zarr",  # Includes numcodecs as a dependency

]

# Requirements which improve performance

performance_requirements = ["opencv-python"]

# Extra format support

format_support = [

    "tifffile",  # For reading, writing and repackaging TIFF files

    "dask",  # Reading and writing TIFF/Zarr with non-standard axis order

    "glymur",  # For reading and writing JP2 files

    "xarray",

]

# Extra codecs support

codec_requirements = ["imagecodecs", "qoi"]

test_requirements = [

    "pytest>=3",

    "opencv-python",

    "scipy",

    "scikit-image",

]

test_requirements += performance_requirements

test_requirements += codec_requirements

docs_requirements = [

    "sphinx",

    "sphinx-autoapi",

]

alternative_requirements = [

    "scipy",  # Alternative to scikit-image, is a dependency of scikit-image

    "scikit-image",  # Alternative to opencv-python for some operations

]

# Command-line interface requirements

cli_requirements = ["Click>=7.0"]

# User experience improving requirements

ux_requirements = ["tqdm"]

# All extra requirements

all_extra_requirements = (

    test_requirements

    + docs_requirements

    + format_support

    + codec_requirements

    + alternative_requirements

    + cli_requirements

    + ux_requirements

)

# Optional dependencies

extra_requirements = {

    "all": all_extra_requirements,

    "test": test_requirements,

    "docs": docs_requirements,

    "cli": cli_requirements,

    "ux": ux_requirements,

    "performance": performance_requirements,

    "formats": format_support,

    "codecs": codec_requirements,

    "jpeg2000": ["glymur"],

}

setup(

    author="John Pocock",

    author_email="j.c.pocock@warwick.ac.uk",

    python_requires=">=3.8",

    classifiers=[

        "Development Status :: 2 - Pre-Alpha",

        "Intended Audience :: Developers",

        "Natural Language :: English",

        "Programming Language :: Python :: 3",

        "Programming Language :: Python :: 3.8",

        "Programming Language :: Python :: 3.9",

        "Programming Language :: Python :: 3.10",

    ],

    description="Whole Slide Image (WSI) conversion for brightfield histology images",

    entry_points={

        "console_scripts": [

            "wsic=wsic.cli:main",

        ],

    },

    install_requires=requirements,

    long_description=readme + "\n\n" + history,

    long_description_content_type="text/markdown",

    include_package_data=True,

    keywords="wsic",

    name="wsic",

    packages=find_packages(include=["wsic", "wsic.*"]),

    test_suite="tests",

    tests_require=test_requirements,

    extras_require=extra_requirements,

    url="https://github.com/john-p/wsic",

    version="0.9.0",

    zip_safe=False,

)