--- a +++ b/.github/workflows/python-app.yml @@ -0,0 +1,114 @@ +# This workflow will install Python dependencies, run tests and lint with a single version of Python +# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions + +name: Python application + +on: + push: + branches: [ dev, main, release ] + tags: v* + pull_request: + branches: [ dev, main, release ] + +permissions: + contents: read + +jobs: + build: + + runs-on: ubuntu-latest + timeout-minutes: 15 + + steps: + - uses: actions/checkout@v3 + + - name: Set up Python 3.10 + uses: actions/setup-python@v3 + with: + python-version: "3.10" + cache: 'pip' + + - name: Install dependencies + run: | + sudo apt-get install -y libopenslide-dev libopenjp2-7 + python -m pip install --upgrade pip + pip install -r requirements.txt + + - name: Echo OpenSlide Version + run: dpkg -s libopenslide-dev | grep Version + + - name: Echo OpenJPEG Version + run: opj_compress -h | head + + - name: List PIP Package Versions + run: | + pip list + + - name: Lint with flake8 + run: | + # stop the build if there are Python syntax errors or undefined names + flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics + # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide + flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics + + - name: Test with pytest + run: | + pytest + - uses: actions/upload-artifact@v2 + with: + name: coverage + path: coverage.xml + + - name: Report test coverage to Codecov + uses: codecov/codecov-action@v2 + with: + files: coverage.xml + fail_ci_if_error: false + verbose: true + + - name: Report test coverage to DeepSource + uses: deepsourcelabs/test-coverage-action@master + with: + key: python + coverage-file: coverage.xml + dsn: ${{ secrets.DEEPSOURCE_DSN }} + fail-ci-on-error: false + + release: + runs-on: ubuntu-latest + timeout-minutes: 15 + needs: build + + steps: + - uses: actions/checkout@v3 + + - name: Set up Python 3.10 + uses: actions/setup-python@v3 + with: + python-version: '3.10' + cache: 'pip' + + - name: Install dependencies + run: | + sudo apt-get install -y libopenslide-dev libopenjp2-7 + python -m pip install --upgrade pip + pip install -r requirements.txt + pip install build + + - name: Build package + run: python -m build + + - name: Publish package to Test PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + user: __token__ + password: ${{ secrets.TEST_PYPI_API_TOKEN }} + repository_url: https://test.pypi.org/legacy/ + skip_existing: true + + - name: Publish package to PyPI + if: startsWith(github.ref, 'refs/tags/v') # Only run on tags starting with v + uses: pypa/gh-action-pypi-publish@release/v1 + with: + user: __token__ + password: ${{ secrets.PYPI_API_TOKEN }}