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a |
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b/resources/config.json |
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1 |
{"use_tissue_detection": true, |
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2 |
"tissue_coverage": 0.7, |
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3 |
"keep_annotated_tiles_despite_too_little_tissue_coverage": false, |
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"processing_level": 5, |
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"blocked_threads": 4, |
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"patches_per_tile": 8, |
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"overlap": 0.25, |
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"annotation_overlap": 0.25, |
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"patch_size": 256, |
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"calibration": {"use_non_pixel_lengths": true, "patch_size_microns": 64, "resize": true}, |
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"slides_file": "/home/katja/Data/svs-WSIs/slides_file.txt", |
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"slides_dir": "/home/katja/Data/svs-WSIs/", |
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"annotation_dir": "/home/katja/Data/svs-WSIs/test_project", |
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"annotation_file_format": "geojson", |
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"output_path": "/home/katja/Data/svs-WSIs/tiles/", |
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"skip_unlabeled_slides": false, |
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"save_annotated_only": false, |
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"output_format": "jpeg", |
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"metadata_format": "json", |
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"show_mode": false, |
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"label_dict": { |
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"non_tumor": {"type": "==", "threshold": 1.0, "annotated": false}, |
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"Tumor": {"type": ">=", "threshold": 0.5, "annotated": true}, |
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"Necrosis": {"type": ">=", "threshold": 0.5, "annotated": true}, |
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"Stroma": {"type": ">=", "threshold": 0.5, "annotated": true} |
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}, |
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"overlapping_annotations_verbose": true |
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} |