--- a
+++ b/scripts/pull_n_chop_glom.sh
@@ -0,0 +1,34 @@
+#!/bin/bash
+
+#cell#
+
+
+# COPY the data to local disk
+# sudo chown -R dlituiev /home/dlituiev/.gsutil/tracker-files
+TMPDIR=/tmp/kidney
+XMLFILELIST=../tables/deidentified_glom_xmls.list
+mkdir -p $TMPDIR 
+LINE=2
+for LINE in `seq 1 83`
+do
+    # PREV_SLIDEID=$(head  /home/dlituiev/metadata/xmlfiles.list | sed -n -e $((${LINE}-1))p | sed 's/\.xml//' )
+    # rm "$HOME/tmpdata/${PREV_SLIDEID}.svs"
+    SLIDEID=$(cat  $XMLFILELIST | sed -n -e ${LINE}p | sed 's/\.xml//' ) || exit 1
+    echo -e "SLIDE ID:\t$SLIDEID"
+
+    SVS="$TMPDIR/${SLIDEID}.svs"
+    XML="$TMPDIR/${SLIDEID}.xml"
+
+    if [ -a "$SVS" ] ; then
+        echo -e "${SVS}\talready exists"
+    else
+        gsutil cp gs://kidney-rejection/${SLIDEID}.xml $TMPDIR  && \
+        gsutil cp gs://kidney-rejection/${SLIDEID}.svs $TMPDIR
+    fi
+
+    python3 $PWD/sample_from_slide.py --data-root "../data/glom" $XML && rm $SVS
+done
+
+# exit 1
+#rm -rf $TMPDIR
+# LINK images for binary classification (inflammation / normal)