--- a
+++ b/scripts/makesets.sh
@@ -0,0 +1,72 @@
+#!/bin/bash
+
+#CLASSES=(infl normal)
+#DATADIR=../data/data_1024/infl_split/
+#DATADIR=/repos/data/data_128_subsample_8x/fullsplit/
+
+#CLASSES=(glom normal)
+
+#DATADIR=../data/data_1024/glom_split/
+DATADIR="$1"
+cd $DATADIR;
+DATADIR=$(pwd -P)
+cd -
+
+CLASSES=(lymph norm)
+echo "CLASSES:"
+for CLASS in ${CLASSES[@]}
+do
+    echo -e "\t$CLASS"
+done
+
+#val_ids=(70bb3032750d09e7549928c0dbf79afc30d7cb68 a1fc67fbb21f43b9e8904b9b46bd94f83493b37a f7f931a5cf3185a385e9aa34e6e9a566fc88000)
+#trainids=(c886827fe8c10b4699a0f1616331e36b46a05617 dfe3ee768f72bddd289c7d5bb88b15cbb89be7e6)
+
+SETFILE=~/repos/tables/splits-2019-03-24.csv
+
+readarray train_ids < <(grep 'train' $SETFILE | cut -f1 -d',' )
+readarray test_ids < <(grep 'test' $SETFILE | cut -f1 -d',' )
+readarray val_ids < <(grep 'val' $SETFILE | cut -f1 -d',' )
+
+echo -e "test\t${test_ids[1]}"
+#val_ids=(01c02ba0782776e0aee49c751d170fb5a7f3e189 1613eab8267591c8aad6db6c18308c970bdb0229 4aeba5a0fd1fd39eb494ee759c8d3d566a30bf63 56356da1a0fa39a7394f83e45ff50bd0f54d9461 8250cc470d1320502cfdd7022d410de161885945 88f73323af6f45440a7a532dc4f5aca51c624f5c)
+
+realpath() {
+    [[ $1 = /* ]] && echo "$1" || echo "$PWD/${1#./}"
+}
+
+for CLASS in ${CLASSES[@]}
+do
+    mkdir -p ${DATADIR}/val/${CLASS}
+    mkdir -p ${DATADIR}/train/${CLASS}
+    mkdir -p ${DATADIR}/test/${CLASS}
+
+    for id in ${test_ids[@]}
+    do
+        echo ""
+        echo -e "ID:\t$id"
+        #ln -s ${DATADIR}/all/${CLASS}/${id}* ${DATADIR}/train/${CLASS}/
+        #find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'echo $PWD/$(readlink $1) ' _ {} \;
+        #find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'ln -s $PWD/$(readlink $1) '${DATADIR}/train/${CLASS}/'' _ {} \;
+		find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'ln -s $(readlink -f $1) '${DATADIR}/test/${CLASS}/'' _ {} \;
+    done
+    echo -e "see\t${DATADIR}/test/"
+
+    for id in ${train_ids[@]}
+    do
+        #echo ""
+        #ln -s ${DATADIR}/all/${CLASS}/${id}* ${DATADIR}/train/${CLASS}/
+        #find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'echo $PWD/$(readlink $1) ' _ {} \;
+        #find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'ln -s $PWD/$(readlink $1) '${DATADIR}/train/${CLASS}/'' _ {} \;
+		find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'ln -s $(readlink -f $1) '${DATADIR}/train/${CLASS}/'' _ {} \;
+    done
+    echo -e "see\t${DATADIR}/train/"
+
+    for id in ${val_ids[@]}
+    do
+        #ln -s ${DATADIR}/all/${CLASS}/${id}* ${DATADIR}/val/${CLASS}/
+		find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'ln -s $(readlink -f $1) '${DATADIR}/val/${CLASS}/'' _ {} \;
+        #find ${DATADIR}/all/${CLASS}/ -name "${id}*" -exec sh -c 'ln -s $PWD/$(readlink $1) '${DATADIR}/val/${CLASS}/'' _ {} \;
+    done
+    echo -e "see\t${DATADIR}/val/"
+done