# syntax=docker/dockerfile:1

FROM tensorflow/tensorflow:2.11.1-gpu

ARG DEBIAN_FRONTEND=noninteractive

ENV TZ=Etc/UTC

# Install necessary packages

RUN apt update && \

    apt install -y liblapack-dev libblas-dev libgl1-mesa-glx libsm6 libxext6 wget vim g++ pkg-config libglib2.0-dev expat libexpat-dev libexif-dev libtiff-dev libgsf-1-dev openslide-tools libopenjp2-tools libpng-dev libtiff5-dev libjpeg-turbo8-dev libopenslide-dev python3-tk python3-dev && \

    sed -i '/^#\sdeb-src /s/^# *//' "/etc/apt/sources.list" && \

    apt update && \

    mkdir /scripts

# Build libvips 8.12 from source [slideflow requires 8.9+, latest deb in Ubuntu 18.04 is 8.4]

RUN apt install build-essential devscripts -y && \

    mkdir /libvips && \

    cd /libvips && \

    wget https://github.com/libvips/libvips/releases/download/v8.12.2/vips-8.12.2.tar.gz && \

    tar zxf vips-8.12.2.tar.gz && \

    cd /libvips/vips-8.12.2 && \

    ./configure && make && make install

ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib

ENV SF_VIPS_VERSION=8.12.2

# Repair pixman

WORKDIR "/scripts"

RUN wget https://raw.githubusercontent.com/slideflow/slideflow/2.0.1/scripts/pixman_repair.sh && \

    chmod +x pixman_repair.sh && \

    ./pixman_repair.sh

# Install slideflow & download scripts

ENV SF_BACKEND=tensorflow

RUN pip3 install --upgrade setuptools pip wheel

RUN pip3 install slideflow[cucim]==3.0.2 cupy-cuda11x tensorflow_datasets tensorflow_probability==0.17.* versioneer && \

    wget https://raw.githubusercontent.com/slideflow/slideflow/3.0.2/scripts/test.py && \

    wget https://raw.githubusercontent.com/slideflow/slideflow/3.0.2/scripts/slideflow-studio.py && \

    wget https://raw.githubusercontent.com/slideflow/slideflow/3.0.2/scripts/run_project.py && \

    wget https://raw.githubusercontent.com/slideflow/slideflow/3.0.2/scripts/qupath_roi.groovy && \

    wget https://raw.githubusercontent.com/slideflow/slideflow/3.0.2/scripts/qupath_roi_legacy.groovy && \

    wget https://raw.githubusercontent.com/slideflow/slideflow/master/scripts/welcome.py && \

    chmod +x /scripts/welcome.py

# Set entrypoint

ENTRYPOINT ["bash", "-c", "python3 /scripts/welcome.py && exec /bin/bash"]