--- a +++ b/docs-source/source/slideflow_cellseg.rst @@ -0,0 +1,23 @@ +.. currentmodule:: slideflow.cellseg + +slideflow.cellseg +================= + +This module contains utility functions for performing whole-slide image cell segmentation with Cellpose. + +See :ref:`cellseg` for more information. + +.. autofunction:: segment_slide + +Segmentation +************ +.. autoclass:: Segmentation +.. autofunction:: slideflow.cellseg.Segmentation.apply_rois +.. autofunction:: slideflow.cellseg.Segmentation.calculate_centroids +.. autofunction:: slideflow.cellseg.Segmentation.calculate_outlines +.. autofunction:: slideflow.cellseg.Segmentation.centroids +.. autofunction:: slideflow.cellseg.Segmentation.centroid_to_image +.. autofunction:: slideflow.cellseg.Segmentation.extract_centroids +.. autofunction:: slideflow.cellseg.Segmentation.mask_to_image +.. autofunction:: slideflow.cellseg.Segmentation.outline_to_image +.. autofunction:: slideflow.cellseg.Segmentation.save \ No newline at end of file