.. currentmodule:: slideflow

.. _dataset:

slideflow.Dataset

=================

.. autoclass:: Dataset

Attributes

----------

.. autosummary::

    Dataset.annotations

    Dataset.filters

    Dataset.filter_blank

    Dataset.filtered_annotations

    Dataset.img_format

    Dataset.min_tiles

    Dataset.num_tiles

Methods

-------

.. autofunction:: slideflow.Dataset.balance

.. autofunction:: slideflow.Dataset.build_index

.. autofunction:: slideflow.Dataset.cell_segmentation

.. autofunction:: slideflow.Dataset.check_duplicates

.. autofunction:: slideflow.Dataset.clear_filters

.. autofunction:: slideflow.Dataset.clip

.. autofunction:: slideflow.Dataset.convert_xml_rois

.. autofunction:: slideflow.Dataset.extract_cells

.. autofunction:: slideflow.Dataset.extract_tiles

.. autofunction:: slideflow.Dataset.extract_tiles_from_tfrecords

.. autofunction:: slideflow.Dataset.filter

.. autofunction:: slideflow.Dataset.find_slide

.. autofunction:: slideflow.Dataset.find_tfrecord

.. autofunction:: slideflow.Dataset.generate_feature_bags

.. autofunction:: slideflow.Dataset.get_tfrecord_locations

.. autofunction:: slideflow.Dataset.get_tile_dataframe

.. autofunction:: slideflow.Dataset.harmonize_labels

.. autofunction:: slideflow.Dataset.is_float

.. autofunction:: slideflow.Dataset.kfold_split

.. autofunction:: slideflow.Dataset.labels

.. autofunction:: slideflow.Dataset.load_annotations

.. autofunction:: slideflow.Dataset.load_indices

.. autofunction:: slideflow.Dataset.manifest

.. autofunction:: slideflow.Dataset.manifest_histogram

.. autofunction:: slideflow.Dataset.patients

.. autofunction:: slideflow.Dataset.get_bags

.. autofunction:: slideflow.Dataset.read_tfrecord_by_location

.. autofunction:: slideflow.Dataset.remove_filter

.. autofunction:: slideflow.Dataset.rebuild_index

.. autofunction:: slideflow.Dataset.resize_tfrecords

.. autofunction:: slideflow.Dataset.rois

.. autofunction:: slideflow.Dataset.slide_manifest

.. autofunction:: slideflow.Dataset.slide_paths

.. autofunction:: slideflow.Dataset.slides

.. autofunction:: slideflow.Dataset.split

.. autofunction:: slideflow.Dataset.split_tfrecords_by_roi

.. autofunction:: slideflow.Dataset.summary

.. autofunction:: slideflow.Dataset.tensorflow

.. autofunction:: slideflow.Dataset.tfrecord_report

.. autofunction:: slideflow.Dataset.tfrecord_heatmap

.. autofunction:: slideflow.Dataset.tfrecords

.. autofunction:: slideflow.Dataset.tfrecords_by_subfolder

.. autofunction:: slideflow.Dataset.tfrecords_folders

.. autofunction:: slideflow.Dataset.tfrecords_from_tiles

.. autofunction:: slideflow.Dataset.tfrecords_have_locations

.. autofunction:: slideflow.Dataset.transform_tfrecords

.. autofunction:: slideflow.Dataset.thumbnails

.. autofunction:: slideflow.Dataset.torch

.. autofunction:: slideflow.Dataset.unclip

.. autofunction:: slideflow.Dataset.update_manifest

.. autofunction:: slideflow.Dataset.update_annotations_with_slidenames

.. autofunction:: slideflow.Dataset.verify_annotations_slides

.. autofunction:: slideflow.Dataset.verify_img_format

.. autofunction:: slideflow.Dataset.verify_slide_names