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.. currentmodule:: slideflow |
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.. _dataset: |
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slideflow.Dataset |
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================= |
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.. autoclass:: Dataset |
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Attributes |
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---------- |
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.. autosummary:: |
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Dataset.annotations |
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Dataset.filters |
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Dataset.filter_blank |
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Dataset.filtered_annotations |
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Dataset.img_format |
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Dataset.min_tiles |
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Dataset.num_tiles |
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Methods |
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------- |
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.. autofunction:: slideflow.Dataset.balance |
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.. autofunction:: slideflow.Dataset.build_index |
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.. autofunction:: slideflow.Dataset.cell_segmentation |
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.. autofunction:: slideflow.Dataset.check_duplicates |
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.. autofunction:: slideflow.Dataset.clear_filters |
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.. autofunction:: slideflow.Dataset.clip |
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.. autofunction:: slideflow.Dataset.convert_xml_rois |
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.. autofunction:: slideflow.Dataset.extract_cells |
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.. autofunction:: slideflow.Dataset.extract_tiles |
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.. autofunction:: slideflow.Dataset.extract_tiles_from_tfrecords |
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.. autofunction:: slideflow.Dataset.filter |
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.. autofunction:: slideflow.Dataset.find_slide |
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.. autofunction:: slideflow.Dataset.find_tfrecord |
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.. autofunction:: slideflow.Dataset.generate_feature_bags |
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.. autofunction:: slideflow.Dataset.get_tfrecord_locations |
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.. autofunction:: slideflow.Dataset.get_tile_dataframe |
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.. autofunction:: slideflow.Dataset.harmonize_labels |
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.. autofunction:: slideflow.Dataset.is_float |
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.. autofunction:: slideflow.Dataset.kfold_split |
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.. autofunction:: slideflow.Dataset.labels |
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.. autofunction:: slideflow.Dataset.load_annotations |
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.. autofunction:: slideflow.Dataset.load_indices |
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.. autofunction:: slideflow.Dataset.manifest |
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.. autofunction:: slideflow.Dataset.manifest_histogram |
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.. autofunction:: slideflow.Dataset.patients |
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.. autofunction:: slideflow.Dataset.get_bags |
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.. autofunction:: slideflow.Dataset.read_tfrecord_by_location |
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.. autofunction:: slideflow.Dataset.remove_filter |
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.. autofunction:: slideflow.Dataset.rebuild_index |
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.. autofunction:: slideflow.Dataset.resize_tfrecords |
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.. autofunction:: slideflow.Dataset.rois |
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.. autofunction:: slideflow.Dataset.slide_manifest |
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.. autofunction:: slideflow.Dataset.slide_paths |
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.. autofunction:: slideflow.Dataset.slides |
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.. autofunction:: slideflow.Dataset.split |
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.. autofunction:: slideflow.Dataset.split_tfrecords_by_roi |
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.. autofunction:: slideflow.Dataset.summary |
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.. autofunction:: slideflow.Dataset.tensorflow |
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.. autofunction:: slideflow.Dataset.tfrecord_report |
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.. autofunction:: slideflow.Dataset.tfrecord_heatmap |
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.. autofunction:: slideflow.Dataset.tfrecords |
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.. autofunction:: slideflow.Dataset.tfrecords_by_subfolder |
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.. autofunction:: slideflow.Dataset.tfrecords_folders |
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.. autofunction:: slideflow.Dataset.tfrecords_from_tiles |
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.. autofunction:: slideflow.Dataset.tfrecords_have_locations |
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.. autofunction:: slideflow.Dataset.transform_tfrecords |
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.. autofunction:: slideflow.Dataset.thumbnails |
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.. autofunction:: slideflow.Dataset.torch |
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.. autofunction:: slideflow.Dataset.unclip |
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.. autofunction:: slideflow.Dataset.update_manifest |
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.. autofunction:: slideflow.Dataset.update_annotations_with_slidenames |
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.. autofunction:: slideflow.Dataset.verify_annotations_slides |
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.. autofunction:: slideflow.Dataset.verify_img_format |
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.. autofunction:: slideflow.Dataset.verify_slide_names |