Index

_

__getitem__() (scpanel.GATclassifier.ClusterData method) __len__() (scpanel.GATclassifier.ClusterData method) __repr__() (scpanel.GATclassifier.ClusterData method) _build_model() (scpanel.GATclassifier.GATclassifier method) _estimator_type (scpanel.SVMRFECV.RFE property) _fit() (scpanel.SVMRFECV.RFE method) _get_support_mask() (scpanel.SVMRFECV.RFE method)

_history (scpanel.GATclassifier.GATclassifier attribute) _model (scpanel.GATclassifier.GATclassifier attribute) _more_tags() (scpanel.SVMRFECV.RFE method) _panel_grid() (in module scpanel.train) _plot_color_cycle() (in module scpanel.palettes) _rfe_single_fit() (in module scpanel.SVMRFECV) _train_model() (scpanel.GATclassifier.GATclassifier method)

A

alpha (scpanel.GATclassifier.GAT attribute)

auc_pvalue() (in module scpanel.train)

C

cal_bootstrap_score() (in module scpanel.select_cell) cal_sample_auc() (in module scpanel.train) cell_type_score() (in module scpanel.select_cell) check_nonnegative_float() (in module scpanel.utils_func) check_nonnegative_integers() (in module scpanel.utils_func) classes_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

ClusterData (class in scpanel.GATclassifier) ClusterLoader (class in scpanel.GATclassifier) compute_cell_weight() (in module scpanel.utils_func) convert_pvalue_to_asterisks() (in module scpanel.train) custom_metrics() (in module scpanel.select_cell) cv (scpanel.SVMRFECV.RFECV attribute) cv_results_ (scpanel.SVMRFECV.RFECV attribute)

D

decide_k() (in module scpanel.select_gene) decision_function() (scpanel.SVMRFECV.RFE method) default_102 (in module scpanel.palettes)

default_20 (in module scpanel.palettes) default_28 (in module scpanel.palettes) downsample_adata() (in module scpanel.utils_func) dropout (scpanel.GATclassifier.GAT attribute)

E

estimator (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

estimator_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

F

feature_names_in_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute) fit() (scpanel.GATclassifier.GATclassifier method) (scpanel.SVMRFECV.RFE method) (scpanel.SVMRFECV.RFECV method)

forward() (scpanel.GATclassifier.GAT method)

G

GAT (class in scpanel.GATclassifier) gat1 (scpanel.GATclassifier.GAT attribute) gat2 (scpanel.GATclassifier.GAT attribute) GATclassifier (class in scpanel.GATclassifier)

gene_score() (in module scpanel.select_gene) get_X_y_from_ann() (in module scpanel.utils_func) godsnot_102 (in module scpanel.palettes) grid_scores_ (scpanel.SVMRFECV.RFECV attribute) (scpanel.SVMRFECV.RFECV property)

I

importance_getter (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

M

make_single_spider() (in module scpanel.train) min_features_to_select (scpanel.SVMRFECV.RFECV attribute) models_predict() (in module scpanel.train) models_score() (in module scpanel.train) models_train() (in module scpanel.train) module scpanel scpanel.GATclassifier scpanel.palettes scpanel.select_cell scpanel.select_gene scpanel.settings scpanel.split_patient scpanel.SVMRFECV scpanel.train scpanel.utils_func

N

n_features_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute) n_features_in_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute) n_features_to_select (scpanel.SVMRFECV.RFE attribute)

n_jobs (scpanel.SVMRFECV.RFECV attribute) n_nodes (scpanel.GATclassifier.GAT attribute) nFeatures (scpanel.GATclassifier.GAT attribute) nHeads (scpanel.GATclassifier.GAT attribute) nHiddenUnits (scpanel.GATclassifier.GAT attribute) num_parts (scpanel.GATclassifier.ClusterData attribute)

P

plot_cell_type_score() (in module scpanel.select_cell) plot_gene_score() (in module scpanel.select_gene) plot_roc_curve() (in module scpanel.train) plot_violin() (in module scpanel.train) predict() (scpanel.GATclassifier.GATclassifier method) (scpanel.SVMRFECV.RFE method)

predict_log_proba() (scpanel.SVMRFECV.RFE method) predict_proba() (scpanel.GATclassifier.GATclassifier method) (scpanel.SVMRFECV.RFE method) preprocess() (in module scpanel.utils_func) process() (scpanel.GATclassifier.ClusterData method) pt_pred() (in module scpanel.train) pt_score() (in module scpanel.train)

R

ranking_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

recursive (scpanel.GATclassifier.ClusterData attribute) RFE (class in scpanel.SVMRFECV) RFECV (class in scpanel.SVMRFECV)

S

save_dir (scpanel.GATclassifier.ClusterData attribute) scipysparse2torchsparse() (in module scpanel.GATclassifier) score() (scpanel.GATclassifier.GATclassifier method) (scpanel.SVMRFECV.RFE method) scoring (scpanel.SVMRFECV.RFECV attribute) scpanel module scpanel.GATclassifier module scpanel.palettes module scpanel.select_cell module scpanel.select_gene module scpanel.settings module scpanel.split_patient module

scpanel.SVMRFECV module scpanel.train module scpanel.utils_func module seed (in module scpanel.GATclassifier) select_celltype() (in module scpanel.select_cell) select_gene() (in module scpanel.select_gene) select_gene_stable() (in module scpanel.select_gene) set_rcParams() (in module scpanel.settings) split_n_folds() (in module scpanel.select_gene) split_patients() (in module scpanel.select_cell) split_train_test() (in module scpanel.split_patient) step (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute) support_ (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

T

tab10 (in module scpanel.palettes)

transform_adata() (in module scpanel.train)

V

vega_10 (in module scpanel.palettes) vega_10_scanpy (in module scpanel.palettes) vega_20 (in module scpanel.palettes)

vega_20_scanpy (in module scpanel.palettes) verbose (scpanel.SVMRFECV.RFE attribute) (scpanel.SVMRFECV.RFECV attribute)

Z

zeileis_28 (in module scpanel.palettes)