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--- a +++ b/docs/build/html/genindex.html @@ -0,0 +1,608 @@ + + +<!DOCTYPE html> +<html class="writer-html5" lang="en" data-content_root="./"> +<head> + <meta charset="utf-8" /> + <meta name="viewport" content="width=device-width, initial-scale=1.0" /> + <title>Index — scPanel 0.1.0 documentation</title> + <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" /> + <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" /> + <link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=fd3f3429" /> + + + <script src="_static/jquery.js?v=5d32c60e"></script> + <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script> + <script src="_static/documentation_options.js?v=01f34227"></script> + <script src="_static/doctools.js?v=9a2dae69"></script> + <script src="_static/sphinx_highlight.js?v=dc90522c"></script> + <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script> + <script src="_static/js/theme.js"></script> + <link rel="index" title="Index" href="#" /> + <link rel="search" title="Search" href="search.html" /> +</head> + +<body class="wy-body-for-nav"> + <div class="wy-grid-for-nav"> + <nav data-toggle="wy-nav-shift" class="wy-nav-side"> + <div class="wy-side-scroll"> + <div class="wy-side-nav-search" > + + + + <a href="index.html" class="icon icon-home"> + scPanel + </a> +<div role="search"> + <form id="rtd-search-form" class="wy-form" action="search.html" method="get"> + <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" /> + <input type="hidden" name="check_keywords" value="yes" /> + <input type="hidden" name="area" value="default" /> + </form> +</div> + </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu"> + <p class="caption" role="heading"><span class="caption-text">Contents:</span></p> +<ul> +<li class="toctree-l1"><a class="reference internal" href="autoapi/index.html">API Reference</a></li> +</ul> + + </div> + </div> + </nav> + + <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" > + <i data-toggle="wy-nav-top" class="fa fa-bars"></i> + <a href="index.html">scPanel</a> + </nav> + + <div class="wy-nav-content"> + <div class="rst-content"> + <div role="navigation" aria-label="Page navigation"> + <ul class="wy-breadcrumbs"> + <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li> + <li class="breadcrumb-item active">Index</li> + <li class="wy-breadcrumbs-aside"> + </li> + </ul> + <hr/> +</div> + <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> + <div itemprop="articleBody"> + + +<h1 id="index">Index</h1> + +<div class="genindex-jumpbox"> + <a href="#_"><strong>_</strong></a> + | <a href="#A"><strong>A</strong></a> + | <a href="#C"><strong>C</strong></a> + | <a href="#D"><strong>D</strong></a> + | <a href="#E"><strong>E</strong></a> + | <a href="#F"><strong>F</strong></a> + | <a href="#G"><strong>G</strong></a> + | <a href="#I"><strong>I</strong></a> + | <a href="#M"><strong>M</strong></a> + | <a href="#N"><strong>N</strong></a> + | <a href="#P"><strong>P</strong></a> + | <a href="#R"><strong>R</strong></a> + | <a href="#S"><strong>S</strong></a> + | <a href="#T"><strong>T</strong></a> + | <a href="#V"><strong>V</strong></a> + | <a href="#Z"><strong>Z</strong></a> + +</div> +<h2 id="_">_</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.__getitem__">__getitem__() (scpanel.GATclassifier.ClusterData method)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.__len__">__len__() (scpanel.GATclassifier.ClusterData method)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.__repr__">__repr__() (scpanel.GATclassifier.ClusterData method)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier._build_model">_build_model() (scpanel.GATclassifier.GATclassifier method)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE._estimator_type">_estimator_type (scpanel.SVMRFECV.RFE property)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE._fit">_fit() (scpanel.SVMRFECV.RFE method)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE._get_support_mask">_get_support_mask() (scpanel.SVMRFECV.RFE method)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier._history">_history (scpanel.GATclassifier.GATclassifier attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier._model">_model (scpanel.GATclassifier.GATclassifier attribute)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE._more_tags">_more_tags() (scpanel.SVMRFECV.RFE method)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train._panel_grid">_panel_grid() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes._plot_color_cycle">_plot_color_cycle() (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV._rfe_single_fit">_rfe_single_fit() (in module scpanel.SVMRFECV)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier._train_model">_train_model() (scpanel.GATclassifier.GATclassifier method)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="A">A</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.alpha">alpha (scpanel.GATclassifier.GAT attribute)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.auc_pvalue">auc_pvalue() (in module scpanel.train)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="C">C</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/select_cell/index.html#scpanel.select_cell.cal_bootstrap_score">cal_bootstrap_score() (in module scpanel.select_cell)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.cal_sample_auc">cal_sample_auc() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/select_cell/index.html#scpanel.select_cell.cell_type_score">cell_type_score() (in module scpanel.select_cell)</a> +</li> + <li><a href="autoapi/scpanel/utils_func/index.html#scpanel.utils_func.check_nonnegative_float">check_nonnegative_float() (in module scpanel.utils_func)</a> +</li> + <li><a href="autoapi/scpanel/utils_func/index.html#scpanel.utils_func.check_nonnegative_integers">check_nonnegative_integers() (in module scpanel.utils_func)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.classes_">classes_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.classes_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData">ClusterData (class in scpanel.GATclassifier)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterLoader">ClusterLoader (class in scpanel.GATclassifier)</a> +</li> + <li><a href="autoapi/scpanel/utils_func/index.html#scpanel.utils_func.compute_cell_weight">compute_cell_weight() (in module scpanel.utils_func)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.convert_pvalue_to_asterisks">convert_pvalue_to_asterisks() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/select_cell/index.html#scpanel.select_cell.custom_metrics">custom_metrics() (in module scpanel.select_cell)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.cv">cv (scpanel.SVMRFECV.RFECV attribute)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.cv_results_">cv_results_ (scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="D">D</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/select_gene/index.html#scpanel.select_gene.decide_k">decide_k() (in module scpanel.select_gene)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.decision_function">decision_function() (scpanel.SVMRFECV.RFE method)</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.default_102">default_102 (in module scpanel.palettes)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.default_20">default_20 (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.default_28">default_28 (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/utils_func/index.html#scpanel.utils_func.downsample_adata">downsample_adata() (in module scpanel.utils_func)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.dropout">dropout (scpanel.GATclassifier.GAT attribute)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="E">E</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.estimator">estimator (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.estimator">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.estimator_">estimator_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.estimator_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="F">F</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.feature_names_in_">feature_names_in_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.feature_names_in_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier.fit">fit() (scpanel.GATclassifier.GATclassifier method)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.fit">(scpanel.SVMRFECV.RFE method)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.fit">(scpanel.SVMRFECV.RFECV method)</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.forward">forward() (scpanel.GATclassifier.GAT method)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="G">G</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT">GAT (class in scpanel.GATclassifier)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.gat1">gat1 (scpanel.GATclassifier.GAT attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.gat2">gat2 (scpanel.GATclassifier.GAT attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier">GATclassifier (class in scpanel.GATclassifier)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/select_gene/index.html#scpanel.select_gene.gene_score">gene_score() (in module scpanel.select_gene)</a> +</li> + <li><a href="autoapi/scpanel/utils_func/index.html#scpanel.utils_func.get_X_y_from_ann">get_X_y_from_ann() (in module scpanel.utils_func)</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.godsnot_102">godsnot_102 (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.grid_scores_">grid_scores_ (scpanel.SVMRFECV.RFECV attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#id0">(scpanel.SVMRFECV.RFECV property)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="I">I</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.importance_getter">importance_getter (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.importance_getter">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="M">M</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.make_single_spider">make_single_spider() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.min_features_to_select">min_features_to_select (scpanel.SVMRFECV.RFECV attribute)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.models_predict">models_predict() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.models_score">models_score() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.models_train">models_train() (in module scpanel.train)</a> +</li> + <li> + module + + <ul> + <li><a href="autoapi/scpanel/index.html#module-scpanel">scpanel</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#module-scpanel.GATclassifier">scpanel.GATclassifier</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#module-scpanel.palettes">scpanel.palettes</a> +</li> + <li><a href="autoapi/scpanel/select_cell/index.html#module-scpanel.select_cell">scpanel.select_cell</a> +</li> + <li><a href="autoapi/scpanel/select_gene/index.html#module-scpanel.select_gene">scpanel.select_gene</a> +</li> + <li><a href="autoapi/scpanel/settings/index.html#module-scpanel.settings">scpanel.settings</a> +</li> + <li><a href="autoapi/scpanel/split_patient/index.html#module-scpanel.split_patient">scpanel.split_patient</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#module-scpanel.SVMRFECV">scpanel.SVMRFECV</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#module-scpanel.train">scpanel.train</a> +</li> + <li><a href="autoapi/scpanel/utils_func/index.html#module-scpanel.utils_func">scpanel.utils_func</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="N">N</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.n_features_">n_features_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.n_features_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.n_features_in_">n_features_in_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.n_features_in_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.n_features_to_select">n_features_to_select (scpanel.SVMRFECV.RFE attribute)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.n_jobs">n_jobs (scpanel.SVMRFECV.RFECV attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.n_nodes">n_nodes (scpanel.GATclassifier.GAT attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.nFeatures">nFeatures (scpanel.GATclassifier.GAT attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.nHeads">nHeads (scpanel.GATclassifier.GAT attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GAT.nHiddenUnits">nHiddenUnits (scpanel.GATclassifier.GAT attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.num_parts">num_parts (scpanel.GATclassifier.ClusterData attribute)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="P">P</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/select_cell/index.html#scpanel.select_cell.plot_cell_type_score">plot_cell_type_score() (in module scpanel.select_cell)</a> +</li> + <li><a href="autoapi/scpanel/select_gene/index.html#scpanel.select_gene.plot_gene_score">plot_gene_score() (in module scpanel.select_gene)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.plot_roc_curve">plot_roc_curve() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.plot_violin">plot_violin() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier.predict">predict() (scpanel.GATclassifier.GATclassifier method)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.predict">(scpanel.SVMRFECV.RFE method)</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.predict_log_proba">predict_log_proba() (scpanel.SVMRFECV.RFE method)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier.predict_proba">predict_proba() (scpanel.GATclassifier.GATclassifier method)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.predict_proba">(scpanel.SVMRFECV.RFE method)</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/utils_func/index.html#scpanel.utils_func.preprocess">preprocess() (in module scpanel.utils_func)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.process">process() (scpanel.GATclassifier.ClusterData method)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.pt_pred">pt_pred() (in module scpanel.train)</a> +</li> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.pt_score">pt_score() (in module scpanel.train)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="R">R</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.ranking_">ranking_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.ranking_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.recursive">recursive (scpanel.GATclassifier.ClusterData attribute)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE">RFE (class in scpanel.SVMRFECV)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV">RFECV (class in scpanel.SVMRFECV)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="S">S</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.ClusterData.save_dir">save_dir (scpanel.GATclassifier.ClusterData attribute)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.scipysparse2torchsparse">scipysparse2torchsparse() (in module scpanel.GATclassifier)</a> +</li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.GATclassifier.score">score() (scpanel.GATclassifier.GATclassifier method)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.score">(scpanel.SVMRFECV.RFE method)</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.scoring">scoring (scpanel.SVMRFECV.RFECV attribute)</a> +</li> + <li> + scpanel + + <ul> + <li><a href="autoapi/scpanel/index.html#module-scpanel">module</a> +</li> + </ul></li> + <li> + scpanel.GATclassifier + + <ul> + <li><a href="autoapi/scpanel/GATclassifier/index.html#module-scpanel.GATclassifier">module</a> +</li> + </ul></li> + <li> + scpanel.palettes + + <ul> + <li><a href="autoapi/scpanel/palettes/index.html#module-scpanel.palettes">module</a> +</li> + </ul></li> + <li> + scpanel.select_cell + + <ul> + <li><a href="autoapi/scpanel/select_cell/index.html#module-scpanel.select_cell">module</a> +</li> + </ul></li> + <li> + scpanel.select_gene + + <ul> + <li><a href="autoapi/scpanel/select_gene/index.html#module-scpanel.select_gene">module</a> +</li> + </ul></li> + <li> + scpanel.settings + + <ul> + <li><a href="autoapi/scpanel/settings/index.html#module-scpanel.settings">module</a> +</li> + </ul></li> + <li> + scpanel.split_patient + + <ul> + <li><a href="autoapi/scpanel/split_patient/index.html#module-scpanel.split_patient">module</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li> + scpanel.SVMRFECV + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#module-scpanel.SVMRFECV">module</a> +</li> + </ul></li> + <li> + scpanel.train + + <ul> + <li><a href="autoapi/scpanel/train/index.html#module-scpanel.train">module</a> +</li> + </ul></li> + <li> + scpanel.utils_func + + <ul> + <li><a href="autoapi/scpanel/utils_func/index.html#module-scpanel.utils_func">module</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/GATclassifier/index.html#scpanel.GATclassifier.seed">seed (in module scpanel.GATclassifier)</a> +</li> + <li><a href="autoapi/scpanel/select_cell/index.html#scpanel.select_cell.select_celltype">select_celltype() (in module scpanel.select_cell)</a> +</li> + <li><a href="autoapi/scpanel/select_gene/index.html#scpanel.select_gene.select_gene">select_gene() (in module scpanel.select_gene)</a> +</li> + <li><a href="autoapi/scpanel/select_gene/index.html#scpanel.select_gene.select_gene_stable">select_gene_stable() (in module scpanel.select_gene)</a> +</li> + <li><a href="autoapi/scpanel/settings/index.html#scpanel.settings.set_rcParams">set_rcParams() (in module scpanel.settings)</a> +</li> + <li><a href="autoapi/scpanel/select_gene/index.html#scpanel.select_gene.split_n_folds">split_n_folds() (in module scpanel.select_gene)</a> +</li> + <li><a href="autoapi/scpanel/select_cell/index.html#scpanel.select_cell.split_patients">split_patients() (in module scpanel.select_cell)</a> +</li> + <li><a href="autoapi/scpanel/split_patient/index.html#scpanel.split_patient.split_train_test">split_train_test() (in module scpanel.split_patient)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.step">step (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.step">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.support_">support_ (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.support_">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="T">T</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.tab10">tab10 (in module scpanel.palettes)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/train/index.html#scpanel.train.transform_adata">transform_adata() (in module scpanel.train)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="V">V</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.vega_10">vega_10 (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.vega_10_scanpy">vega_10_scanpy (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.vega_20">vega_20 (in module scpanel.palettes)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.vega_20_scanpy">vega_20_scanpy (in module scpanel.palettes)</a> +</li> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFE.verbose">verbose (scpanel.SVMRFECV.RFE attribute)</a> + + <ul> + <li><a href="autoapi/scpanel/SVMRFECV/index.html#scpanel.SVMRFECV.RFECV.verbose">(scpanel.SVMRFECV.RFECV attribute)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="Z">Z</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="autoapi/scpanel/palettes/index.html#scpanel.palettes.zeileis_28">zeileis_28 (in module scpanel.palettes)</a> +</li> + </ul></td> +</tr></table> + + + + </div> + </div> + <footer> + + <hr/> + + <div role="contentinfo"> + <p>© Copyright 2024, Yi Carissa Xie.</p> + </div> + + Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a + <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a> + provided by <a href="https://readthedocs.org">Read the Docs</a>. + + +</footer> + </div> + </div> + </section> + </div> + <script> + jQuery(function () { + SphinxRtdTheme.Navigation.enable(true); + }); + </script> + +</body> +</html> \ No newline at end of file