Installation
git clone https://github.com/ltbyshi/exseek-pipeline.git
cd exseek-pipeline/
python setup.py develop
Small RNA
- Input directory:
data/example_small
- Configuration file:
config/example_small.yaml
- Genome files:
genome/hg38/fasta, genome/hg38/gtf_longest_transcript, genome/hg38/bed
exseek -d example_small build_index
exseek -d example_small quality_control
exseek -d example_small cutadapt
exseek -d example_small quality_control_clean
exseek -d example_small mapping
exseek -d example_small bigwig
exseek -d example_small call_domains
exseek -d example_small count_matrix
exseek -d example_small normalization
exseek -d example_small feature_selection
Datasets
Models
