Commit [4c33d4]

Initial commit

DanielG DanielG 2025-04-21

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added exseek/snakefiles/quality_control_se.snakemake
added exseek/snakefiles/rename_fastq.snakemake
added exseek/snakefiles/rules/filter.snakemake
added exseek/snakefiles/scripts/summarize_cross_validation.py
added exseek/templates/fastqc.ipynb
added exseek/templates/igv.html
added exseek/templates/igv/config/circRNA.yaml
added exseek/templates/igv/config/genome.yaml
added exseek/templates/igv/config/rRNA.yaml
added exseek/templates/igv/index.html
added exseek/templates/igv/main.html
added exseek/templates/sequential_mapping.snakemake
added exseek/templates/sequential_mapping_subworkflow.snakemake
added exseek/templates/summarize_cutadapt_pe.ipynb
added exseek/templates/summarize_cutadapt_se.ipynb
added exseek/templates/summarize_feature_selection.ipynb
added exseek/templates/summarize_mapping_star.ipynb
added exseek/templates/summarize_read_counts_long.ipynb
added exseek/templates/summarize_read_counts_small.ipynb
added requirements.txt
added setup.py
added tutorial/README.md
added tutorial/pipeline.png
exseek/snakefiles/quality_control_se.snakemake Diff Switch to unified view
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exseek/snakefiles/rename_fastq.snakemake Diff Switch to unified view
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exseek/snakefiles/rules/filter.snakemake Diff Switch to unified view
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exseek/snakefiles/scripts/summarize_cross_validation.py Diff Switch to unified view
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exseek/templates/fastqc.ipynb Diff Switch to unified view
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exseek/templates/igv.html Diff Switch to unified view
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exseek/templates/igv/config/circRNA.yaml Diff Switch to unified view
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exseek/templates/igv/config/genome.yaml Diff Switch to unified view
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exseek/templates/igv/config/rRNA.yaml Diff Switch to unified view
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exseek/templates/igv/index.html Diff Switch to unified view
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exseek/templates/igv/main.html Diff Switch to unified view
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exseek/templates/sequential_mapping.snakemake Diff Switch to unified view
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exseek/templates/sequential_mapping_subworkflow.snakemake Diff Switch to unified view
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exseek/templates/summarize_cutadapt_pe.ipynb Diff Switch to unified view
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exseek/templates/summarize_cutadapt_se.ipynb Diff Switch to unified view
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exseek/templates/summarize_feature_selection.ipynb Diff Switch to unified view
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exseek/templates/summarize_mapping_star.ipynb Diff Switch to unified view
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exseek/templates/summarize_read_counts_long.ipynb Diff Switch to unified view
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exseek/templates/summarize_read_counts_small.ipynb Diff Switch to unified view
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requirements.txt Diff Switch to unified view
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setup.py Diff Switch to unified view
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tutorial/README.md Diff Switch to unified view
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tutorial/pipeline.png
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