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Models
:
DanielG
/
exSEEK
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[4c33d4]
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Initial commit
Authored by:
DanielG
2025-04-21
Browse code at this revision
Parent:
[7df5ac]
Child:
[41c1e8]
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exseek/snakefiles/quality_control_se.snakemake
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exseek/snakefiles/rename_fastq.snakemake
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exseek/snakefiles/rules/filter.snakemake
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exseek/snakefiles/scripts/summarize_cross_validation.py
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exseek/templates/fastqc.ipynb
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exseek/templates/igv.html
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exseek/templates/igv/config/circRNA.yaml
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exseek/templates/igv/config/genome.yaml
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exseek/templates/igv/config/rRNA.yaml
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exseek/templates/igv/index.html
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exseek/templates/igv/main.html
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exseek/templates/sequential_mapping.snakemake
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exseek/templates/sequential_mapping_subworkflow.snakemake
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exseek/templates/summarize_cutadapt_pe.ipynb
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exseek/templates/summarize_cutadapt_se.ipynb
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exseek/templates/summarize_feature_selection.ipynb
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exseek/templates/summarize_mapping_star.ipynb
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exseek/templates/summarize_read_counts_long.ipynb
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exseek/templates/summarize_read_counts_small.ipynb
added
requirements.txt
added
setup.py
added
tutorial/README.md
added
tutorial/pipeline.png
exseek/snakefiles/quality_control_se.snakemake
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exseek/snakefiles/rename_fastq.snakemake
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exseek/snakefiles/rules/filter.snakemake
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exseek/snakefiles/scripts/summarize_cross_validation.py
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exseek/templates/fastqc.ipynb
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exseek/templates/igv.html
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exseek/templates/igv/config/circRNA.yaml
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exseek/templates/igv/config/genome.yaml
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exseek/templates/igv/config/rRNA.yaml
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exseek/templates/igv/index.html
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exseek/templates/igv/main.html
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exseek/templates/sequential_mapping.snakemake
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exseek/templates/sequential_mapping_subworkflow.snakemake
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exseek/templates/summarize_cutadapt_pe.ipynb
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exseek/templates/summarize_cutadapt_se.ipynb
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exseek/templates/summarize_feature_selection.ipynb
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exseek/templates/summarize_mapping_star.ipynb
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exseek/templates/summarize_read_counts_long.ipynb
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exseek/templates/summarize_read_counts_small.ipynb
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requirements.txt
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setup.py
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tutorial/README.md
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tutorial/pipeline.png
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