# file paths
genome_dir: genome/hg38
output_dir: output/small_se_example
data_dir: data/small_se_example

# general parameters
threads_compress: 1

# mapping parameters
adaptor: AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
paired_end: false
# Discard reads of length below this value
min_read_length: 16
small_rna: true
count_method: domains_combined