--- a +++ b/docs/quick_start_small_rna.md @@ -0,0 +1,27 @@ +## Installation + +```bash +git clone https://github.com/ltbyshi/exseek-pipeline.git +cd exseek-pipeline/ +python setup.py develop +``` + +## Small RNA + +* **Input directory**: `data/example_small` +* **Configuration file**: `config/example_small.yaml` +* **Genome files**: `genome/hg38/fasta`, `genome/hg38/gtf_longest_transcript`, `genome/hg38/bed` + +```bash +exseek -d example_small build_index +exseek -d example_small quality_control +exseek -d example_small cutadapt +exseek -d example_small quality_control_clean +exseek -d example_small mapping +exseek -d example_small bigwig +exseek -d example_small call_domains +exseek -d example_small count_matrix +exseek -d example_small normalization +exseek -d example_small feature_selection +``` +