--- a
+++ b/docker/install-R-packages.R
@@ -0,0 +1,18 @@
+# From CRAN
+install.packages(c('devtools', 'argparse', 'magrittr', 'readr', 'mvoutlier', 'ggfortify', 'SIS', 'latticeExtra'), Ncpus=4, ask=FALSE)
+# From Bioconductor
+if (!requireNamespace("BiocManager", quietly = TRUE))
+    install.packages("BiocManager")
+#BiocManager::install("TCGAbiolinks", version = "3.8")
+#source('https://bioconductor.org/biocLite.R')
+BiocManager::install(c('SingleCellExperiment', 'scater', 'scran', 
+    'EDASeq', 'RUVSeq', 'DESeq2', 'edgeR', 'sva'), Ncpus=4, ask=FALSE, update=TRUE)
+
+# From GitHub
+#library(devtools)
+library(remotes)
+#install_github('ChenMengjie/VIPER')
+#install_github('kassambara/easyGgplot2')
+#install_github("Vivianstats/scImpute")
+install_github("hemberg-lab/scRNA.seq.funcs")
+install_github('theislab/kBET')