--- a
+++ b/man/rnaseq_ic.Rd
@@ -0,0 +1,27 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/rnaseq.R
+\name{rnaseq_ic}
+\alias{rnaseq_ic}
+\title{Utility for using voom transformation with TMLE for biomarker discovery}
+\usage{
+rnaseq_ic(biotmle, weights = TRUE, ...)
+}
+\arguments{
+\item{biotmle}{A \code{bioTMLE} object containing next-generation sequencing
+count data in its "assays" slot.}
+
+\item{weights}{A \code{logical} indicating whether to return quality weights
+of samples in the output object.}
+
+\item{...}{Other arguments to be passed to \code{\link[limma]{voom}} or
+\code{\link[limma]{voomWithQualityWeights}} as appropriate.}
+}
+\value{
+\code{EList} object containing voom-transformed expression measures
+ of count data (actually, the mean-variance trend) in the "E" slot, to be
+ passed into the biomarker TMLE procedure.
+}
+\description{
+This function prepares next-generation sequencing data (counts) for use with
+the biomarker TMLE procedure by invoking the voom transform of \code{limma}.
+}