--- a +++ b/inst/NEWS @@ -0,0 +1,94 @@ +biotmle 1.18.0 (BioC 3.14): +- Forthcoming. + +--- + +biotmle 1.17.0: +- Removal of `future` and `doFuture` for simplification of parallelization. All + control of parallel computation now done through `BiocParallel`. + +--- + +biotmle 1.16.0 (BioC 3.13): +- No significant updates. + +--- + +biotmle 1.15.0: +- No significant updates. + +--- + +biotmle 1.14.0 (BioC 3.12): +- No significant updates. + +--- +biotmle 1.13.0: +- No significant updates. + +--- + +biotmle 1.12.0: +- No significant updates. + +--- + +biotmle 1.11.0 (BioC 3.11): +- Change of estimation backend from the `tmle` package to the `drtmle` package. +- Removal of option to have repeated subjects since unsupported in new backend. +- Adds argument `bppar_debug` to facilitate debugging around parallelization. + +--- + +biotmle 1.10.0 (BioC 3.10): +- No significant updates. + +--- + +biotmle 1.8.0 (BioC 3.9): +- No significant updates. + +--- + +biotmle 1.6.0 (BioC 3.8): +- No significant updates. + +--- + +biotmle 1.4.0 (BioC 3.7): +- An updated release of this package for Bioconductor 3.7, released April 2018. +- This release primarily implements minor changes, including the use of colors + in the plots produced by the visualization methods. + +--- + +biotmle 1.3.0 (BioC 3.6): +- An updated release of this package for Bioconductor 3.6, released in October + 2017. +- An option for applying this methodology to next-generation sequencing data has + been added, based on the popular "voom" transform of the limma R package. +- Facilities for parallelized computation have been completely re-implemented: + current routines favor a combination of future and BiocParallel. +- The method for estimating biomarkers based on an observed outcome has been + removed (temporarily). Inference based on this method requires re-thinking. +- A full suite of unit tests have been added, covering most package functions. + +--- + +biotmle 1.0.0 (BioC 3.5): +- The first release of this package was made as part of Bioconductor 3.5, in + 2016. + +--- + +The biotmle R package provides routines for statistical methodology first +described in the technical manuscript [1] and the software paper [2]: + +1. Nima S. Hejazi, Sara Kherad-Pajouh, Mark J. van der Laan, Alan E. Hubbard. + Variance stabilization of targeted sstimators of causal parameters in + high-dimensional settings. https://arxiv.org/abs/1710.05451 + +2. Nima S. Hejazi, Weixin Cai, Alan E. Hubbard. biotmle: Targeted Learning for + Biomarker Discovery. The Journal of Open Source Software, 2(15), 2017. + https://dx.doi.org/10.21105/joss.00295 +