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      <a href="../articles/exposureBiomarkers.html">Identifying Biomarkers from an Exposure Variable with `biotmle`</a>





  
  

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      <h1>Reference</h1>





  
  

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    <table class="ref-index">





  
  

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        <th colspan="2">





  
  

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          <h2 id="section-all-functions" class="hasAnchor"><a href="#section-all-functions" class="anchor"></a>All functions</h2>





  
  

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          <p class="section-desc"></p>





  
  

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        </th>





  
  

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        <td>





  
  

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          <p><code><a href="bioTMLE-class.html">bioTMLE-class</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Constructor for class bioTMLE</p></td>





  
  

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      </tr><tr>





  
  

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        <td>





  
  

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          <p><code><a href="biomarkertmle.html">biomarkertmle()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Biomarker Evaluation with Targeted Minimum Loss Estimation of the ATE</p></td>





  
  

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      </tr><tr>





  
  

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          <p><code><a href="data.frame_OR_EList-class.html">data.frame_OR_EList-class</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>S4 class union data.frame_OR_EList</p></td>





  
  

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      </tr><tr>





  
  

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        <td>





  
  

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          <p><code><a href="eif.html">eif()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Accessor for Table of Raw Efficient Influence Function Values</p></td>





  
  

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      </tr><tr>





  
  

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        <td>





  
  

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          <p><code><a href="exp_biomarkertmle.html">exp_biomarkertmle()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>TMLE procedure using ATE for Biomarker Identication from Exposure</p></td>





  
  

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      </tr><tr>





  
  

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        <td>





  
  

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          <p><code><a href="heatmap_ic.html">heatmap_ic()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Heatmap for class biotmle</p></td>





  
  

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      </tr><tr>





  
  

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        <td>





  
  

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          <p><code><a href="modtest_ic.html">modtest_ic()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Moderated Statistical Tests for Influence Functions</p></td>





  
  

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      </tr><tr>





  
  

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        <td>





  
  

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          <p><code><a href="plot.bioTMLE.html">plot(<i>&lt;bioTMLE&gt;</i>)</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Plot p-values from moderated statistical tests for class biotmle</p></td>





  
  

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        <td>





  
  

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          <p><code><a href="rnaseq_ic.html">rnaseq_ic()</a></code> </p>





  
  

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        <td><p>Utility for using voom transformation with TMLE for biomarker discovery</p></td>





  
  

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        <td>





  
  

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          <p><code><a href="toptable.html">toptable()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Accessor for Results of Moderated Influence Function Hypothesis Testing</p></td>





  
  

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          <p><code><a href="volcano_ic.html">volcano_ic()</a></code> </p>





  
  

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        </td>





  
  

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        <td><p>Volcano plot for class biotmle</p></td>





  
  

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      </tr>





  
  

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